RNA id: TU191923


Basic Information

Item Value
RNA id TU191923
length 222
lncRNA type intronic
GC content 0.44
exon number 1
gene id G168539
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 62315751 ~ 62315972 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcgatgatggctcagaaagccttttggagtgggtctgtgggcTTTTCcatgtttattttacctttattgaactaggcaagtcagttaagaacaaattcttataggaacagtgggttaactgcctgttcgggggcagaacgacatatttgtaccttgtcaactctggggtttgaacttgcaaccttccggttactagtccaacactctaaccactaggttac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191837 lncRNA upstream 120283 62194155 ~ 62195468 (+) True G168460
TU191782 lncRNA upstream 198154 62117175 ~ 62117597 (+) True G168409
TU191705 lncRNA upstream 276928 61991511 ~ 62038823 (+) True G168335
TU191662 lncRNA upstream 369307 61946204 ~ 61946444 (+) True G168293
TU191660 lncRNA upstream 370333 61945109 ~ 61945418 (+) True G168291
TU192380 lncRNA downstream 153957 62469929 ~ 62471380 (+) True G168985
TU192381 lncRNA downstream 158168 62474140 ~ 62476409 (+) True G168986
TU192386 lncRNA downstream 166155 62482127 ~ 62482380 (+) True G168991
TU192387 lncRNA downstream 166768 62482740 ~ 62482954 (+) True G168992
TU192429 lncRNA downstream 204588 62520560 ~ 62530202 (+) True LOC118941151
XM_036952547.1 mRNA upstream 161255 62092419 ~ 62154496 (+) True ppm1h
XM_021567628.2 mRNA upstream 253007 62057929 ~ 62062744 (+) True avpr1aa
XM_036952522.1 mRNA upstream 399632 61910943 ~ 61916119 (+) True LOC110491137
XM_036934623.1 mRNA upstream 410566 61903331 ~ 61905185 (+) False LOC118937286
XM_036934069.1 mRNA upstream 435094 61870393 ~ 61880657 (+) False LOC118936783
XM_036952607.1 mRNA downstream 2278 62318250 ~ 62369304 (+) True fbln1
XR_005037452.1 mRNA downstream 204560 62520532 ~ 62530986 (+) False LOC118941151
XR_005037456.1 mRNA downstream 246211 62562183 ~ 62618837 (+) False LOC110493430
XR_005037458.1 mRNA downstream 251382 62567354 ~ 62618837 (+) False LOC110493430
XR_005037455.1 mRNA downstream 252238 62568210 ~ 62618837 (+) False LOC110493430
TU190972 other upstream 435327 61879770 ~ 61880424 (+) True LOC118936783
TU190931 other upstream 588297 61726959 ~ 61727454 (+) True G167609
TU190863 other upstream 783424 61531589 ~ 61532327 (+) True LOC110510683
TU190618 other upstream 1083206 61232196 ~ 61232545 (+) True G167325
TU190578 other upstream 1241160 61062593 ~ 61074591 (+) True G167288
TU192528 other downstream 469386 62785358 ~ 62785643 (+) True G169130
TU193588 other downstream 1504489 63820461 ~ 63830320 (+) True G170131
TU193612 other downstream 1557276 63873248 ~ 63878233 (+) True G170150
TU196081 other downstream 3215174 65531146 ~ 65536787 (+) True map1lc3b
TU196056 other downstream 3277545 65593517 ~ 65640976 (+) False jph3

Expression Profile