RNA id: TU192380


Basic Information

Item Value
RNA id TU192380
length 1452
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G168985
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 62469929 ~ 62471380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATCCATAATATGTACAAATAAAGGTGGACCCTTGTCTGTTCCAAAGCAGTAGATATAAATATAGCACATGTAAAATATACCATAAAACTCAACAACAACCATGGAAATATTGATTATGACTCACAATCATGTATAAAAATAGTCATGTTGACACCATTTTTATGTATTGGATTTAAATAGTATTTTGTGTCGGAATTTTCTGGTAAGTTCGTTTTTTATCTCAATTTGGCCCAAGTAAATGTCATGTTTATTTTTGTTATGTCTGGGATAactgacgggccgctcccagaCGGTGAGGGTAGGCAGCAACACATTCGTCACGCTGACCGTCAACAAATggcacctcaggggtgcgtgcttagtcccctcatgTACTCTCTGTTctcccatgactgcgtggccgtgcacgactccaacaccctcaGTAGGTTTGCTGACTACACAGCGGTGGTAAGCCTGATAACCGAATACAAtgagagcctacagggaggaggtcagtgacctgtcagtgtggtgccacgacaacaacctctccctcaacgcaaaatgaaggagctgatcgtggactacaggaagcaAAGGGTCGAACATGCCTCCATCCACATcgacgtggctgtagtggagcgggtcgagagcttcaagttcctcggtgtccacatcagtAAGGAATGAACATggtacacacacatcaacacagtcgtgaagaaagcacgacaacgcctcttccctctcaggaggctgaaaatattcctcaaaaagttctacacctgcaccatcgagagcatcttgactggctgcatcaccgcttggtatggaaactgcttggcatccgatcgcaaggcgctacagagggtagggcTTAGTACACCACAGAGGccgaactccctgccatccaggacctctataccaggaagtgtcagaggaaggccctacattTTTTGGGATTTTCCAGctacccaaatcatagactgttccctctgctaccgcacaacAAGTAGTAccgtctggaaccaacaggaccctaaacagcttctacccacaagccataagactgataaatagttggttaaatagttaaccaataagcttcccggactatctgcattgaaccctttttgcactaactcattgtactcatcacatatgctgctgctactgtttattatctatcctgttgcctagtcactttatccctacctatatgtacacatctacctcaattacctcatacccttgcacattgactcggtactggtatcctgtgtatagagccaagttatcgttactcattttttattcattccttgtgatatttttctattatttctctctgcgttgttgggaagggcccctaAGTCAGCATtgcactgttagtctacacctgttgtttacaatgcATGTGACAAAAACTGTTTGATTTGATAACTCATTTGTTATATCAAGTTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191923 lncRNA upstream 153957 62315751 ~ 62315972 (+) True G168539
TU191837 lncRNA upstream 274461 62194155 ~ 62195468 (+) True G168460
TU191782 lncRNA upstream 352332 62117175 ~ 62117597 (+) True G168409
TU191705 lncRNA upstream 431106 61991511 ~ 62038823 (+) True G168335
TU191662 lncRNA upstream 523485 61946204 ~ 61946444 (+) True G168293
TU192381 lncRNA downstream 2760 62474140 ~ 62476409 (+) True G168986
TU192386 lncRNA downstream 10747 62482127 ~ 62482380 (+) True G168991
TU192387 lncRNA downstream 11360 62482740 ~ 62482954 (+) True G168992
TU192429 lncRNA downstream 49180 62520560 ~ 62530202 (+) True LOC118941151
TU192407 lncRNA downstream 97528 62568908 ~ 62589395 (+) False LOC110493430
XM_036952598.1 mRNA upstream 100621 62283212 ~ 62369308 (+) False fbln1
XM_036952590.1 mRNA upstream 100621 62283214 ~ 62369308 (+) False fbln1
XM_036952607.1 mRNA upstream 100625 62318250 ~ 62369304 (+) True fbln1
XM_036952617.1 mRNA upstream 123979 62283204 ~ 62345950 (+) False fbln1
XM_036952547.1 mRNA upstream 315433 62092419 ~ 62154496 (+) True ppm1h
XR_005037452.1 mRNA downstream 49152 62520532 ~ 62530986 (+) False LOC118941151
XR_005037456.1 mRNA downstream 90803 62562183 ~ 62618837 (+) False LOC110493430
XR_005037458.1 mRNA downstream 95974 62567354 ~ 62618837 (+) False LOC110493430
XR_005037455.1 mRNA downstream 96830 62568210 ~ 62618837 (+) False LOC110493430
XR_005037453.1 mRNA downstream 96831 62568211 ~ 62618837 (+) False LOC110493430
TU190972 other upstream 589505 61879770 ~ 61880424 (+) True LOC118936783
TU190931 other upstream 742475 61726959 ~ 61727454 (+) True G167609
TU190863 other upstream 937602 61531589 ~ 61532327 (+) True LOC110510683
TU190618 other upstream 1237384 61232196 ~ 61232545 (+) True G167325
TU190578 other upstream 1395338 61062593 ~ 61074591 (+) True G167288
TU192528 other downstream 313978 62785358 ~ 62785643 (+) True G169130
TU193588 other downstream 1349081 63820461 ~ 63830320 (+) True G170131
TU193612 other downstream 1401868 63873248 ~ 63878233 (+) True G170150
TU196081 other downstream 3059766 65531146 ~ 65536787 (+) True map1lc3b
TU196056 other downstream 3122137 65593517 ~ 65640976 (+) False jph3

Expression Profile