RNA id: TCONS_00028413


Basic Information

Item Value
RNA id TCONS_00028413
length 2517
RNA type mRNA
GC content 0.50
exon number 18
gene id XLOC_014296
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43669122 ~ 43707261 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGATGCAGGACATGTCTTCTAACCCTTCAGAGCCACTGACCACATCTAACAGTGCGGCGAGCTCCAGCTCCAGTGGAGAGCAGACAGctgaacacaacacaacactggaTTCAGATGCTGCGAATCATTCAACTCTGAACAACAGTAATCAGTCACCACAGTCCACAGTGGCTCCAGCCACAACACCAGCTGGTACAACACTGCTCTCTGTCATTGTCTTAGGGCTGGTCGTCTCTGCTGGCCAAAATGTGGAGGTCACTCTACCACGCAATGAAGTGAAGCTCAGTGCTTATGTAGTGCCAGCGCCACCTACAGGGACCAACTATGACTTTGACTGGCGTTTGATAACACATCCAAAAGATTACAGTGGAGAAATGGAGGGTAAACACACCATGACACTTAAGCTGAGTAAGCTGACGGTGGGTCTGTATGAGTTTGAGGTGGTGGTAGATGGAGAGGGTGCTCACGGGGAGGGATACGTCAATGTCACTGTCAAACCAGAGCCACGAGTGAATAAGCCACCTGTTGCAGTGGTTTCTCCAAAGTATCAGGAAATCTCATTACCGACCAGCTCCACTGTGATTGATGGCAGTCGGAGCACTGATGATGATAAAGTGGTGCTGTGGCACTGGGAGGAGGTGAAGGGGCCGCTCCGAGAGGAAAAGGCCTCAGGAGACACTGATATTCTCACCCTCACCAACCTGGTTCCCGGAAACTACACCTTCAGTCTTACAGTCACTGATTCAGATGGGGCTCAGAATTCAACCCAAGCCATGCTGTTAGTCAACAAGGCCACAGACTACAGGCCTACTGCTAATGCTGGACCCAACCAAGTGATCACACTCCCACACAACTACATCACACTGAACGGCAACCAGAGCACTGATGACCACGACAATCTGTCCTACGAATGGTCACTCAGCCCTGAGAGCAAAGGGAAGGTGGTGGAGATGCAGGGAGTGAGGACGCCAACTCTGCAGCTCTCTGCCATGCAGGAGGGAGATTACACCTTTGAATTGACCGTCACTGACTCGTCTGGACAGCAGGACACGACTCAGGTCACTGTCATTGTCCAGCCAGAAAATAACCAGCCTCCTGTAGCGGATGCTGGTCCAGACAAGGAGCTGACGCTGCCAGTTGATCACACCACACTGGATGGCGGCAAGAGCACAGATGACCAGAAAATAGTCACGTACCACTGGAAAAAGACCAAGGGTCCAGAAGGGGTGAAGCTTGATAATGCAGAAACTGTGGTCGCCACCGTCACTGGCCTGCAGGAGGGCGAGTACATTTTCATGCTGACCGTGACGGATGAAAGAAACCTGGAGAGCTCTGACACCGTCTCTGTCATCGTCCGAGAAGAGAATGATCAGCCACCGGTTGCAAAAGTGGTGTCTAGTCCTCCGATCACTTTGCCGGTGCGTACAGCAGTTCTAGATGGTTCTCGATCATCAGATGATAAAGGCAGCATCAGTTATCTGTGGACCCGTGAGGAGAACAGTCCAGCCGCAGGGGATGTCCTGAATCACTCTGACCACCAGGCTGTGCTTTTTCTTGGTAATCTGGTGGAAGGGAAGTACAGTTTCACTCTGACCGTCACTGACAGTAAAGGAAAGACCAGCTCTGACAGTGGCGTTGTAGATGTTCGGCCAGATGTCTACGAGCGGGATTTGGTGGAGCTGATCCTGGAAGTGGCCGTGGCTCAGGTGTCCCGCAGACAGAAGGATATGTACATCAGGCAGGTCGGTGTCCTGCTGGGTGTCCTGGACAGTGACATCACCATTCGAGAGATTAGCGCCTTTAATGAGCACAGCACTCGTCTGGTATTTCTGGTATCAGGAGGTCCAGGAAGGCCTCCATTAACTGGGCATAGTGTGGCTATGGAACTACGCAACAAATTTCGCAAGCAAAAAAACGAGTTCCTCATCTTTAAGGCCCGACGGGTGGACACAGTTATCTGCCAGCTGAACTGCTCTGGTCATGGAGAATGCGACTCTTTCACCAGACGCTGCGTTTGCCACCTGTTCTGGATGGAGAATTTGTTTAGTACTTATTTTGGAGATGCTGAGAGCAACTGTGAAGGAAGCTTGTATGTCTTGTTTGATGATCCatttatTGTATTATATGTAACGATAGCATCCTTCATGATCGtggttgccatagcaactgtaataTGGGGCTTGGTGTGCTGTTGTCGAAGTTTAAAAAAAGAGCCAATgaacctggcaataaagctctttctgattctgattttgaACTTGGCATTCAATTTGAAAGTCTTCCTTTTTTTATATCTCCTGCTGTTGTGTGCTCCTTCAGGTCGTCTGAAGTCTGTGCCAGCTCCCACATCTTCTGCACTCATGCACTCAGACTCTGATCTGGAAAGTGACGACGGTCAAGCAGGAATCCCCTGGTCAGATCGAGAGCGCGGGAAGCTGCTTCCACCCCAAAACGGATCTCTACGTAACGGCCAGGGTCCACATAAACCTAAAAAAACACGAGAGGAGCTGCTTTAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000051723

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028407 lncRNA upstream 85032 43592839 ~ 43599344 (+) True XLOC_014293
TCONS_00030040 lncRNA upstream 135365 43546647 ~ 43549011 (+) False XLOC_014291
TCONS_00030039 lncRNA upstream 135365 43546647 ~ 43549011 (+) True XLOC_014291
TCONS_00028400 lncRNA upstream 260231 43420765 ~ 43424145 (+) True XLOC_014287
TCONS_00030038 lncRNA upstream 433182 43250553 ~ 43251194 (+) True XLOC_014282
TCONS_00028415 lncRNA downstream 9238 43715970 ~ 43724855 (+) False XLOC_014297
TCONS_00030041 lncRNA downstream 80271 43787003 ~ 43791576 (+) True XLOC_014300
TCONS_00030042 lncRNA downstream 80410 43787142 ~ 43790716 (+) True XLOC_014301
TCONS_00030043 lncRNA downstream 94100 43800832 ~ 43804410 (+) False XLOC_014302
TCONS_00030044 lncRNA downstream 94445 43801177 ~ 43804410 (+) True XLOC_014302
TCONS_00028409 mRNA upstream 72496 43604257 ~ 43611880 (+) False XLOC_014294
TCONS_00028410 mRNA upstream 78218 43604643 ~ 43606158 (+) True XLOC_014294
TCONS_00028408 mRNA upstream 78724 43604256 ~ 43605652 (+) False XLOC_014294
TCONS_00028406 mRNA upstream 80444 43579786 ~ 43603932 (+) False XLOC_014293
TCONS_00028405 mRNA upstream 112078 43563179 ~ 43572298 (+) True XLOC_014292
TCONS_00028414 mRNA downstream 9179 43715911 ~ 43737071 (+) False XLOC_014297
TCONS_00028416 mRNA downstream 9875 43716607 ~ 43726697 (+) True XLOC_014297
TCONS_00028417 mRNA downstream 43944 43750676 ~ 43760606 (+) False XLOC_014298
TCONS_00028418 mRNA downstream 47263 43753995 ~ 43768721 (+) True XLOC_014298
TCONS_00028419 mRNA downstream 74238 43780970 ~ 43786940 (+) True XLOC_014299
TCONS_00028411 other upstream 18865 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028401 other upstream 232429 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028380 other upstream 603316 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028379 other upstream 606497 43077744 ~ 43077879 (+) True XLOC_014279
TCONS_00028365 other upstream 768835 42915419 ~ 42915541 (+) True XLOC_014274
TCONS_00028433 other downstream 302741 44009473 ~ 44032164 (+) False XLOC_014312
TCONS_00028436 other downstream 1802133 45508865 ~ 45508981 (+) True XLOC_014316
TCONS_00028450 other downstream 2536888 46243620 ~ 46280931 (+) False XLOC_014327
TCONS_00028459 other downstream 3592434 47299166 ~ 47309383 (+) False XLOC_014336
TCONS_00028462 other downstream 3599891 47306623 ~ 47306738 (+) True XLOC_014337

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000054_01173734_01187846.mRNA True 4155 mRNA 0.49 21 CI01000054 1173734 ~ 1188947 (+)