Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028416 |
| length | 692 |
| RNA type | mRNA |
| GC content | 0.55 |
| exon number | 7 |
| gene id | XLOC_014297 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 43715911 ~ 43737071 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007190 | activation of adenylate cyclase activity | biological_process |
| GO:0008154 | actin polymerization or depolymerization | biological_process |
| GO:0045761 | regulation of adenylate cyclase activity | biological_process |
| GO:0001756 | somitogenesis | biological_process |
| GO:0000902 | cell morphogenesis | biological_process |
| GO:0007010 | cytoskeleton organization | biological_process |
| GO:0008078 | mesodermal cell migration | biological_process |
| GO:0007163 | establishment or maintenance of cell polarity | biological_process |
| GO:0030864 | cortical actin cytoskeleton | cellular_component |
| GO:0008179 | adenylate cyclase binding | molecular_function |
| GO:0003779 | actin binding | molecular_function |
| GO:0003785 | actin monomer binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-6459 | Predicted to enable actin monomer binding activity and adenylate cyclase binding activity. Acts upstream of or within mesodermal cell migration and somitogenesis. Predicted to be located in plasma membrane. Predicted to be active in cytoplasm. Is expressed in adaxial cell; ectoderm; heart; segmental plate; and skeletal muscle. Orthologous to human CAP1 (cyclase associated actin cytoskeleton regulatory protein 1). |
| ensembl_id | ENSDART00000133199 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00028407 | lncRNA | upstream | 117263 | 43592839 ~ 43599344 (+) | True | XLOC_014293 |
| TCONS_00030040 | lncRNA | upstream | 167596 | 43546647 ~ 43549011 (+) | False | XLOC_014291 |
| TCONS_00030039 | lncRNA | upstream | 167596 | 43546647 ~ 43549011 (+) | True | XLOC_014291 |
| TCONS_00028400 | lncRNA | upstream | 292462 | 43420765 ~ 43424145 (+) | True | XLOC_014287 |
| TCONS_00030038 | lncRNA | upstream | 465413 | 43250553 ~ 43251194 (+) | True | XLOC_014282 |
| TCONS_00030041 | lncRNA | downstream | 60306 | 43787003 ~ 43791576 (+) | True | XLOC_014300 |
| TCONS_00030042 | lncRNA | downstream | 60445 | 43787142 ~ 43790716 (+) | True | XLOC_014301 |
| TCONS_00030043 | lncRNA | downstream | 74135 | 43800832 ~ 43804410 (+) | False | XLOC_014302 |
| TCONS_00030044 | lncRNA | downstream | 74480 | 43801177 ~ 43804410 (+) | True | XLOC_014302 |
| TCONS_00029734 | lncRNA | downstream | 1190402 | 44917099 ~ 44959698 (+) | False | XLOC_014314 |
| TCONS_00028412 | mRNA | upstream | 9346 | 43669122 ~ 43707261 (+) | False | XLOC_014296 |
| TCONS_00028413 | mRNA | upstream | 9875 | 43684376 ~ 43706732 (+) | True | XLOC_014296 |
| TCONS_00028409 | mRNA | upstream | 104727 | 43604257 ~ 43611880 (+) | False | XLOC_014294 |
| TCONS_00028410 | mRNA | upstream | 110449 | 43604643 ~ 43606158 (+) | True | XLOC_014294 |
| TCONS_00028408 | mRNA | upstream | 110955 | 43604256 ~ 43605652 (+) | False | XLOC_014294 |
| TCONS_00028417 | mRNA | downstream | 23979 | 43750676 ~ 43760606 (+) | False | XLOC_014298 |
| TCONS_00028418 | mRNA | downstream | 27298 | 43753995 ~ 43768721 (+) | True | XLOC_014298 |
| TCONS_00028419 | mRNA | downstream | 54273 | 43780970 ~ 43786940 (+) | True | XLOC_014299 |
| TCONS_00028420 | mRNA | downstream | 96271 | 43822968 ~ 43833995 (+) | False | XLOC_014303 |
| TCONS_00028421 | mRNA | downstream | 101407 | 43828104 ~ 43833995 (+) | True | XLOC_014303 |
| TCONS_00028411 | other | upstream | 51096 | 43665391 ~ 43665511 (+) | True | XLOC_014295 |
| TCONS_00028401 | other | upstream | 264660 | 43439401 ~ 43451947 (+) | False | XLOC_014288 |
| TCONS_00028380 | other | upstream | 635547 | 43080925 ~ 43081060 (+) | True | XLOC_014280 |
| TCONS_00028379 | other | upstream | 638728 | 43077744 ~ 43077879 (+) | True | XLOC_014279 |
| TCONS_00028365 | other | upstream | 801066 | 42915419 ~ 42915541 (+) | True | XLOC_014274 |
| TCONS_00028433 | other | downstream | 282776 | 44009473 ~ 44032164 (+) | False | XLOC_014312 |
| TCONS_00028436 | other | downstream | 1782168 | 45508865 ~ 45508981 (+) | True | XLOC_014316 |
| TCONS_00028450 | other | downstream | 2516923 | 46243620 ~ 46280931 (+) | False | XLOC_014327 |
| TCONS_00028459 | other | downstream | 3572469 | 47299166 ~ 47309383 (+) | False | XLOC_014336 |
| TCONS_00028462 | other | downstream | 3579926 | 47306623 ~ 47306738 (+) | True | XLOC_014337 |
