RNA id: TU193074


Basic Information

Item Value
RNA id TU193074
length 1303
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G169651
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 63036655 ~ 63037957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agttcatataaggaaatcagtcaattgaaatagaattcattaggccctaatctacagatttcacatgactgggcaggggcacagccatgggtgcaACATGGCCAATGTACTGAATAAATGCACTTGTAAATGTAGAGTGGGAAAGTGATTAAAACATACAATCCCTGGATGAAGAAAATATAATTTCCAGAAGTATTCATGATATGAATCGGCCCACTTGAGCATATCATCAATCATTGCATCTTACTTGTCTCCCCTGTGAGTCGTTGTCTACTTTTAAGATGTGTGTCAATCCTGAAACATCTGTCACAACAACTGCAACGATAtcatttctcccctgtgtgggaCTTTCTATGATATTTCAGATTTCCACTCTGATTGAATGCTTTGCCACAATCAGGGCAGCGaaatggcttctcccctgtgtgaatccGGATGTGTTTCTTCAGATCGCCGCTGGTGCTGAATCCTTTGCCACAAACAGGGCAGTGACACGTTTTCTCCCCTGTGTGGCTTCTCATGTGCACGATCAGATTGCTGTTTAAGGTGAACCATTTACTACAAACATGACAACAATACCTAGCTGCAATGTGAGTTTGGAGGTGATCTTTCATACTTTCTGTTGACGCCATATGCTTTCCACACACTCCACAAAGTGATTCTTTATCGTTTGTGTGAGTTTGAACATGTTTAAATAATAAGCCCATGTAATGAAAATACTTGCCACACACCTTACAACAACCAGGAGTAGCATGACCTTGCCTAGGTGATTTCAGGTGGAACAACGGTGTGGATTTGTTATCCTTAGTGTTGATAAGGGAGCTTTGTAATTTTACCATCTTTATTCTCTGTGATTTGACTGACTTGAAACCTGACGGAGGTCCGCCAGTCTCCATCCCACTGTCACTTTCACTGTTTTCACTCGGAGCTGCAGAACAGTCTGGATTTACTGCAGAGAGGGGCTGAAAGACACTGGTTGGTTCTGATTCTCCGTAGTCCTCTCCATCAGGTTCTGTTTTGATCTGTTCAGTTGTAGTGCTGGgtagagtgtctctctctctgtttccttcctTTTGGGCTTGATAGGGATGTGAGGGTTGAGTTGGGTCATAAGCAGGAGTGAATATGGAGTCTTTAGTGTGAGCCTCAAGCCCTTGAGgctgctcttcctcctgactGGCCCCACGTTCCTCTTTGATCTGTGTGGACTCTGGGTCCTCATGCCTCAGACTGGGGCTCCACTCCTGCTCACAGTGCTGCTGCTCCGGGGGAATCTCCacttcagagacagagagacagagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193069 lncRNA upstream 6099 63030349 ~ 63030556 (+) True G169646
TU193064 lncRNA upstream 10165 63026283 ~ 63026490 (+) True G169641
TU193035 lncRNA upstream 33891 63002554 ~ 63002764 (+) True G169613
TU193033 lncRNA upstream 34216 63002113 ~ 63002439 (+) True G169611
TU193025 lncRNA upstream 40409 62996006 ~ 62996246 (+) True G169603
TU193077 lncRNA downstream 3741 63041698 ~ 63042006 (+) True G169653
TU193078 lncRNA downstream 4632 63042589 ~ 63042801 (+) True G169654
TU193079 lncRNA downstream 5932 63043889 ~ 63044095 (+) True G169655
TU193099 lncRNA downstream 13392 63051349 ~ 63051560 (+) True G169675
TU193151 lncRNA downstream 57142 63095099 ~ 63150059 (+) True G169711
XM_021567767.2 mRNA upstream 13793 63007323 ~ 63022862 (+) True mrps35
XR_005037459.1 mRNA upstream 109183 62926746 ~ 62927472 (+) True LOC118941152
XM_021567722.2 mRNA upstream 298741 62723445 ~ 62737914 (+) False LOC110493442
XM_021567847.2 mRNA downstream 188213 63226170 ~ 63238260 (+) True LOC110493518
XM_021567859.2 mRNA downstream 201095 63239052 ~ 63248916 (+) True hdac10
XM_021567870.2 mRNA downstream 211532 63249489 ~ 63262311 (+) False parvb
XM_021567887.2 mRNA downstream 213437 63251394 ~ 63262311 (+) False parvb
XM_021567878.2 mRNA downstream 217922 63255879 ~ 63262311 (+) True parvb
TU192528 other upstream 251012 62785358 ~ 62785643 (+) True G169130
TU190972 other upstream 1156231 61879770 ~ 61880424 (+) True LOC118936783
TU190931 other upstream 1309201 61726959 ~ 61727454 (+) True G167609
TU190863 other upstream 1504328 61531589 ~ 61532327 (+) True LOC110510683
TU190618 other upstream 1804110 61232196 ~ 61232545 (+) True G167325
TU193588 other downstream 782504 63820461 ~ 63830320 (+) True G170131
TU193612 other downstream 835291 63873248 ~ 63878233 (+) True G170150
TU196081 other downstream 2493189 65531146 ~ 65536787 (+) True map1lc3b
TU196056 other downstream 2555560 65593517 ~ 65640976 (+) False jph3
TU196057 other downstream 2555560 65593517 ~ 65640976 (+) True jph3

Expression Profile