RNA id: TU193612


Basic Information

Item Value
RNA id TU193612
length 3189
RNA type TUCP
GC content 0.35
exon number 3
gene id G170150
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 63873248 ~ 63878233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTGATCCATTTATTTGAGTTGGTACAGTACTACAGTAGACGGTTTGTAGTAGAGGGACACATGGCGTTTGGTTCCTCGCCAGAAAATGTCTTGAGACTTATTCATACACGATGAAATCCGATTGTAACTCCCAAAACACATACTCCGACCAATGCTTTCACAATGACATGAGACATCATCACTCCCTTAAGGCTGTATCCCAGACAATGACATCTCTCCATTTACGTTATGAACACATCCCCAAGCAGGCCAAAGCATGGACAGAGTAGCTTTATACATCAAATGAAATGGCTTAAATCGCCAATAAATACAAGTATAAAAAAAACACCTTGATAATAATTAGCATTATCAACAAAGAAATACCTGGATCATACAATATAGAAAGGGCATTCAACTTAAAGCACCTTGGCAGTCCAGGTTCACCAACTGATACCAAATCAAAATCAGAACCATGGCAACAGCCAAGAAAAAGAATGAGCCGTAACAAAAATAATACTTAAATAACATAataatactattattattattgtcttaATACCATTATCCAGTCAGGTTTCCCTATGATTAGACCTTCTGCTACTAACGGATATGCACCAGTTAATTCCAGTTTGGCAGATAGAGTTTAATCAGATTCTTTCCTTTTTTTTTCTCCTGATATCACTCCCTTAGTTTAGGAATTCCCTGCTTTGGTACAGATGGAGTCTTACCATGACTTGTCTGGGGTCAAACAAGTGGTTGTCAATGTGATGGCACCTACAAGTATGTGTTTATCCCCGTGTTATGCTATGTGTTAGTATTTTAGAGAGGTCACGGACATAATAAGAGGCCATGGATTTCCCTTTTGGGGGGTGTCAATGGTCACCTCTTTCTTTGGAAGTGTACAAATGTATAAGGCCCTGTTCTCTGTGGTTGGGTCACCAGGCTCTATAACACAGTTGGTTCTCTATCTACGTGATGTAAGTTCACAGGTACAACACCGCAATATGACTGATCTTAGGTCAGCTGTTCTCACCCCTCAGGTGTACCAAAACAGAGGGAATATTCAGATCCCACTGACGTCAGATCAGTCCTCTAATCTCTTACGGCCAAACTCAGGGAAGAAATACTTTCTGCCATAACATAAAGCAATATAAAGTTTCTATATTTTGGAGAATCAAAAACAGAAGCGTAATGAAACAAAATACTAACATAGTATAATTTTATCACTGTAAATCCAGTTGACAATAAAAGGCAATACAAAGGGCAATAAAATGCAATATAATACAGAACGGGTCTGTCGTTTCAATCAATACCCAGGACTTTGCACCAGCAGACCTTTGACAACATTCAACATGTTCATTCTGCTGCTTTGGGGGTTGCTATAGTTTCCCATACACATGTTCTGATAATATATGGGAAGTATCAGTCACAGATCTGACGCCCCATCCCAGGGTTGAAATGTGTTGCACACTAAGGCCATTCTAAACACGCCACACAAACACATTCCACAGAACACACTCGGCCTATGACACAACTTTCTTTAACAGCCTCTAGCGTTTGGCTTAAAACAATTCCTTAACACTGAAGTAGAAATATAACAAAAGCCTGCCAGGCTATTATTGTTGTAAAATGAATTCATTTTCAGATGGGGTTCCCCCATCTATGGTTAAAAGTTCCAGGGGCACATACAGAACCCAATCCATTTCATCCCCTGAATCATTGAAGCTTCTTCTCAtctttggttaaaaaaaaaacacaaaaaaacacaaaaaaactttCAATTTCCTTTCTTTTTACTCCGAACTCACTTTCTCTATGTCACTTTCACTAGTCTACATATCTGTTTCCTTCAACTCTTTCGCCCTTTCCAACAGGAAAGGCCTCTCAAATCGCACCATCACCAGGAACATTTCTCTTTCCCTCCAACACTTGTTTCCCACTCAAACCTCTACTACACTCTACCTCTCACTTTCACTCCACCATCATTTTCCTCTCTGCTACACGCTACTTTCCTCTAATAGAAACAATAGCTGGCTAATTATGCTAAGTTGACATAATGGCCCTGTACACACAGCTGGAGGCCTGacagcacacacaccacagaacccCCCCCTGCCAGGTGCCGATAACATCTCCCGCACCAACACGTCTCCAGCCATTGTCTGTGGAATGTGCTGTGTCATTAGAGCACTGAAACAAATCCTCCTGCTTAGCCCTTTGTGGAGTGGGAGGGGGCGCCTGGGTTCAAAATGAACTAGGCTATAACATCCACAAATAACAACCTGAGCATTGTGTGGATGTTATAGCCTCAGCCTGGCCAGCTGGctgcctcttctctccccccccggGCCCTCCCCGGCTAGGTGAGGTTGCTGCTGATGTCCAGGGCTTGCTGGTACACCTGAGTCATGTCGTCCTCCAACACCATGCTGGACGGACGGCTCTGGCTACGGGACAGGCCTGAGTCACCCGCCAAGGAAGGCTCCCCGAGAGCACCAGCTGAGGGAGGGCCGCTGTAGGTGGAATACTTCCCGTTGCGCTTCAAGATGCCCTTCCTCCCCACCACTCTCCTAGGAGGGGAGCTGCAGGCGGTGACCCGGGACATGGTGGCGCCCCCTAGCAACTCGGAGGACTCGCTGCGCTCCGGGGAGGAGTAGTACCCTGATTCCCGTTGTTGGTTGTTCTTCAGGATGCCCTTCTTGGGGAGGCTGGGCACCATCTTAGCTGGCGAGCCCCCTGCCAGGGcaggctcctcctcctcctcctcctctctgtcggGGCTAGAGCAGCTTCCTTCTCCCTTGGCTGGCCTGAGCTCCATCATCGCTCCACCACTCCCCAGCTCCACCTCCTCCAGGCTGGGTGAGCGCTGCTCTTCCGTCACCCTGGTCTTGAGAATCCCCTTGGGCCTCTTCAGCCCTGGCTtgtccccctcccctccaccgtGGGGCCCATCCCCCAGTTCATTCTCCTTCTTGGACTTCTTGGGACGCTGGCGGAGGACCAGGGGCAGCAGGGTGGTGGGTTTTCCCGGCCGGGGCTCGGTGCGGTTCTGCCAGTCAATGAAGCGGGCCAGCATGGGAGAGGAGGTGCCGCTGTCACGCTGTGTCTCACAGTCGCACACGCTGCTCTTCCAGCCCCAGTTGACCCACCAGTGGTTGGCGATGTCTTCCACCGTGGCCCGCCGCTCTGGGTTCACCATCATCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193430 lncRNA upstream 85329 63766983 ~ 63787919 (+) True LOC110493594
TU193429 lncRNA upstream 86917 63766983 ~ 63786331 (+) False LOC110493594
TU193561 lncRNA upstream 110047 63761681 ~ 63763201 (+) True LOC118941167
TU193424 lncRNA upstream 163116 63708288 ~ 63710132 (+) True plxnb2b
TU193488 lncRNA upstream 280986 63590849 ~ 63592262 (+) True G170035
TU194206 lncRNA downstream 117889 63996122 ~ 63996775 (+) True G170697
TU194262 lncRNA downstream 188256 64066489 ~ 64144121 (+) True G170751
TU194286 lncRNA downstream 223854 64102087 ~ 64104111 (+) True G170774
TU194380 lncRNA downstream 501762 64379995 ~ 64381175 (+) True G170865
TU194485 lncRNA downstream 512907 64391140 ~ 64395041 (+) True G170953
XM_021567959.2 mRNA upstream 85326 63766888 ~ 63787922 (+) False LOC110493594
XR_005037485.1 mRNA upstream 110044 63761732 ~ 63763204 (+) False LOC118941167
XM_036952828.1 mRNA upstream 131324 63713054 ~ 63741924 (+) False tubgcp6
XM_021567981.2 mRNA downstream 37692 63915925 ~ 63942569 (+) True mov10l1
XM_021618342.2 mRNA downstream 72708 63950941 ~ 63952742 (+) True LOC110533812
XM_021567998.2 mRNA downstream 111194 63989427 ~ 64092188 (+) False nell2a
XM_036952885.1 mRNA downstream 111194 63989427 ~ 64092188 (+) True nell2a
XM_021568059.2 mRNA downstream 291031 64169264 ~ 64180203 (+) True LOC110493658
TU193588 other upstream 42928 63820461 ~ 63830320 (+) True G170131
TU192528 other upstream 1087605 62785358 ~ 62785643 (+) True G169130
TU190972 other upstream 1992824 61879770 ~ 61880424 (+) True LOC118936783
TU190931 other upstream 2145794 61726959 ~ 61727454 (+) True G167609
TU190863 other upstream 2340921 61531589 ~ 61532327 (+) True LOC110510683
TU196081 other downstream 1652913 65531146 ~ 65536787 (+) True map1lc3b
TU196056 other downstream 1715284 65593517 ~ 65640976 (+) False jph3
TU196057 other downstream 1715284 65593517 ~ 65640976 (+) True jph3
TU196344 other downstream 2057363 65935596 ~ 65936133 (+) True G172639
TU196564 other downstream 2384393 66262626 ~ 66266023 (+) True LOC110494096

Expression Profile