RNA id: TCONS_00028421


Basic Information

Item Value
RNA id TCONS_00028421
length 592
RNA type mRNA
GC content 0.52
exon number 4
gene id XLOC_014303
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43822968 ~ 43833995 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTAAGCTCACATGAGGGCAAGAGGGAGAAGAAAGGGGGAAGTGATGGAAAATCAAGAGAGAGGAGGGAAGTTCCAGGGCCAGTGGATGAGGATGAAGAGCCTTATGAGGCTCCGACCATGTCTTTTGAATCCTTTCTTACATATGACGCTCCCACCCCAACTAAAAAGAAAAAGCAGCCCTCCCGACCCCCTCAGCCCCCTGCCCCGCTTCCTTCTGCTTCCTCCTCCAAGTCCAGCAAAGCCAACGGGACCAGCAGTAAACGCTCAAAGCCATCCTCATCCTCTTCCTCAGTGACCACACCTGCTGTTCCAGAGAAACGCAAGAAGGTTGTGGATGTGGTTCCCACACTTCCTGATATCCCTTTGCCAGCTATTCAGCCCTTCTACAGACCACTGCCCTCCATTGACCTCACGCCACTCTCCCCCCAGAGACGCAAAGtTCCAGTGTCAAATGAGGAAGAGGATGGTGGCTACACAGGGCGACGGCTGAACTCTAAAATGGTGGTGTACTCCGGGTCCAAGACTGCATATTTGCCCAAAATGATGTCCCTGTATGAGCAGTGCATTAGAGTCCTGCAGAACAACATCGACT

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0070449 elongin complex cellular_component

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-040426-2810 Predicted to act upstream of or within transcription elongation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of elongin complex. Orthologous to human ELOA (elongin A).

Ensembl:

ensembl_id ENSDART00000166031

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030043 lncRNA upstream 23694 43800832 ~ 43804410 (+) False XLOC_014302
TCONS_00030044 lncRNA upstream 23694 43801177 ~ 43804410 (+) True XLOC_014302
TCONS_00030041 lncRNA upstream 36528 43787003 ~ 43791576 (+) True XLOC_014300
TCONS_00030042 lncRNA upstream 37388 43787142 ~ 43790716 (+) True XLOC_014301
TCONS_00028415 lncRNA upstream 103249 43715970 ~ 43724855 (+) False XLOC_014297
TCONS_00029734 lncRNA downstream 1083104 44917099 ~ 44959698 (+) False XLOC_014314
TCONS_00029733 lncRNA downstream 1083104 44917099 ~ 44959698 (+) False XLOC_014314
TCONS_00029732 lncRNA downstream 1083104 44917099 ~ 44959698 (+) True XLOC_014314
TCONS_00030045 lncRNA downstream 1525282 45359277 ~ 45365727 (+) True XLOC_014315
TCONS_00030046 lncRNA downstream 1893219 45727214 ~ 45728062 (+) True XLOC_014317
TCONS_00028419 mRNA upstream 41164 43780970 ~ 43786940 (+) True XLOC_014299
TCONS_00028418 mRNA upstream 59383 43753995 ~ 43768721 (+) True XLOC_014298
TCONS_00028417 mRNA upstream 67498 43750676 ~ 43760606 (+) False XLOC_014298
TCONS_00028414 mRNA upstream 91033 43715911 ~ 43737071 (+) False XLOC_014297
TCONS_00028422 mRNA downstream 44054 43878049 ~ 43880951 (+) True XLOC_014304
TCONS_00028423 mRNA downstream 50125 43884120 ~ 43901467 (+) False XLOC_014305
TCONS_00028424 mRNA downstream 50188 43884183 ~ 43896659 (+) False XLOC_014305
TCONS_00028425 mRNA downstream 51775 43885770 ~ 43898949 (+) True XLOC_014305
TCONS_00028426 mRNA downstream 71676 43905671 ~ 43960448 (+) False XLOC_014306
TCONS_00028411 other upstream 162593 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028401 other upstream 376157 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028380 other upstream 747044 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028379 other upstream 750225 43077744 ~ 43077879 (+) True XLOC_014279
TCONS_00028365 other upstream 912563 42915419 ~ 42915541 (+) True XLOC_014274
TCONS_00028433 other downstream 175478 44009473 ~ 44032164 (+) False XLOC_014312
TCONS_00028436 other downstream 1674870 45508865 ~ 45508981 (+) True XLOC_014316
TCONS_00028450 other downstream 2409625 46243620 ~ 46280931 (+) False XLOC_014327
TCONS_00028459 other downstream 3465171 47299166 ~ 47309383 (+) False XLOC_014336
TCONS_00028462 other downstream 3472628 47306623 ~ 47306738 (+) True XLOC_014337

Expression Profile

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