RNA id: TU196875


Basic Information

Item Value
RNA id TU196875
length 437
RNA type TUCP
GC content 0.42
exon number 1
gene id G173121
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65383437 ~ 65383873 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catttcttaaagatatccataaaaagtgtcgtttaaagtttgccacaagccacctgggagccacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaacttggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttcaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196692 lncRNA downstream 272285 65110629 ~ 65111152 (-) True G172938
TU196691 lncRNA downstream 277716 65104540 ~ 65105721 (-) True G172937
TU196682 lncRNA downstream 289678 65093518 ~ 65093759 (-) True G172929
TU195785 lncRNA downstream 306883 65076289 ~ 65076554 (-) True G172129
TU195775 lncRNA downstream 313643 65069414 ~ 65069794 (-) True G172119
TU196877 lncRNA upstream 1601 65385474 ~ 65386709 (-) True G173123
TU196888 lncRNA upstream 23130 65407003 ~ 65407350 (-) True G173134
TU196960 lncRNA upstream 93348 65477221 ~ 65478048 (-) True G173191
TU196808 lncRNA upstream 104010 65487883 ~ 65488931 (-) True det1
TU196987 lncRNA upstream 140549 65524422 ~ 65525128 (-) True G173214
XM_021568341.2 mRNA downstream 17438 65111274 ~ 65365999 (-) True ntrk3a
XM_021568366.2 mRNA downstream 17439 65111274 ~ 65365998 (-) False ntrk3a
XM_036953120.1 mRNA downstream 17439 65111274 ~ 65365998 (-) False ntrk3a
XM_036953129.1 mRNA downstream 17439 65111274 ~ 65365998 (-) False ntrk3a
XM_036953144.1 mRNA downstream 17439 65111274 ~ 65365998 (-) False ntrk3a
XM_021568376.2 mRNA upstream 103514 65487387 ~ 65509066 (-) False det1
XM_021568384.2 mRNA upstream 103514 65487387 ~ 65509066 (-) False det1
XM_021568395.2 mRNA upstream 103514 65487387 ~ 65509066 (-) False det1
XM_021568404.2 mRNA upstream 103514 65487387 ~ 65509066 (-) False det1
XM_021568425.2 mRNA upstream 151406 65535279 ~ 65571025 (-) False zcchc14
TU195797 other downstream 297249 65085572 ~ 65086188 (-) True G172141
TU194766 other downstream 1215039 64165963 ~ 64168398 (-) True tmem117
TU194598 other downstream 1419616 63959523 ~ 63963821 (-) True LOC110501772
TU193660 other downstream 2232586 63146774 ~ 63150851 (-) True LOC110493507
TU191507 other downstream 3867781 61515237 ~ 61515656 (-) True G168141
TU196928 other upstream 150598 65534471 ~ 65536781 (-) False zcchc14
TU196931 other upstream 150598 65534471 ~ 65536781 (-) False zcchc14
TU196932 other upstream 150598 65534471 ~ 65536781 (-) False zcchc14
TU196934 other upstream 150598 65534471 ~ 65536781 (-) False zcchc14
TU196935 other upstream 150598 65534471 ~ 65536781 (-) False zcchc14

Expression Profile