RNA id: TU196888


Basic Information

Item Value
RNA id TU196888
length 348
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G173134
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65407003 ~ 65407350 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagaaggtctgtatggataAGTGGGCCAAAAtcactgctgcagtgtgtgcaaacctggtcaagaactacaggaaacgtatgatctctgtaattgcaaacaaaggtttctgtaccaaatattaagttctccttttctgatgtatcaaatacttatgtcatgcaataaaatgctaattaattacttaaaaatcatacaatgtgatgttctgtatttttgttttagattccatctctcacagttgaagtgtacctatgattaaaattacagacctctacatgctttgtaagtaggaaaacctgcaaaatcgtcggtgaatcaaatacttgttctccccactgtatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196877 lncRNA downstream 20294 65385474 ~ 65386709 (-) True G173123
TU196692 lncRNA downstream 295851 65110629 ~ 65111152 (-) True G172938
TU196691 lncRNA downstream 301282 65104540 ~ 65105721 (-) True G172937
TU196682 lncRNA downstream 313244 65093518 ~ 65093759 (-) True G172929
TU195785 lncRNA downstream 330449 65076289 ~ 65076554 (-) True G172129
TU196960 lncRNA upstream 69871 65477221 ~ 65478048 (-) True G173191
TU196808 lncRNA upstream 80533 65487883 ~ 65488931 (-) True det1
TU196987 lncRNA upstream 117072 65524422 ~ 65525128 (-) True G173214
TU196930 lncRNA upstream 123561 65530911 ~ 65531432 (-) False zcchc14
TU196941 lncRNA upstream 129644 65536994 ~ 65539900 (-) True zcchc14
XM_021568341.2 mRNA downstream 41004 65111274 ~ 65365999 (-) True ntrk3a
XM_036953120.1 mRNA downstream 41005 65111274 ~ 65365998 (-) False ntrk3a
XM_021568376.2 mRNA upstream 80037 65487387 ~ 65509066 (-) False det1
XM_021568384.2 mRNA upstream 80037 65487387 ~ 65509066 (-) False det1
XM_021568395.2 mRNA upstream 80037 65487387 ~ 65509066 (-) False det1
XM_021568404.2 mRNA upstream 80037 65487387 ~ 65509066 (-) False det1
XM_021568425.2 mRNA upstream 127929 65535279 ~ 65571025 (-) False zcchc14
TU196875 other downstream 23130 65383437 ~ 65383873 (-) True G173121
TU195797 other downstream 320815 65085572 ~ 65086188 (-) True G172141
TU194766 other downstream 1238605 64165963 ~ 64168398 (-) True tmem117
TU194598 other downstream 1443182 63959523 ~ 63963821 (-) True LOC110501772
TU193660 other downstream 2256152 63146774 ~ 63150851 (-) True LOC110493507
TU196928 other upstream 127121 65534471 ~ 65536781 (-) False zcchc14
TU196931 other upstream 127121 65534471 ~ 65536781 (-) False zcchc14
TU196932 other upstream 127121 65534471 ~ 65536781 (-) False zcchc14
TU196934 other upstream 127121 65534471 ~ 65536781 (-) False zcchc14
TU196935 other upstream 127121 65534471 ~ 65536781 (-) False zcchc14

Expression Profile