RNA id: TU196960


Basic Information

Item Value
RNA id TU196960
length 828
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G173191
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65477221 ~ 65478048 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaactttgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaccttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttcgggtatgtctctatcagttttgcacatcgagagactgacattttttcccatttctccttgcaatacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggatttaggtctggactttgacttgaccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaatttgaaccatcttctctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaatttgggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196888 lncRNA downstream 69871 65407003 ~ 65407350 (-) True G173134
TU196877 lncRNA downstream 90512 65385474 ~ 65386709 (-) True G173123
TU196692 lncRNA downstream 366069 65110629 ~ 65111152 (-) True G172938
TU196691 lncRNA downstream 371500 65104540 ~ 65105721 (-) True G172937
TU196682 lncRNA downstream 383462 65093518 ~ 65093759 (-) True G172929
TU196808 lncRNA upstream 9835 65487883 ~ 65488931 (-) True det1
TU196987 lncRNA upstream 46374 65524422 ~ 65525128 (-) True G173214
TU196930 lncRNA upstream 52863 65530911 ~ 65531432 (-) False zcchc14
TU196941 lncRNA upstream 58946 65536994 ~ 65539900 (-) True zcchc14
TU197012 lncRNA upstream 96327 65574375 ~ 65575315 (-) True G173239
XM_021568341.2 mRNA downstream 111222 65111274 ~ 65365999 (-) True ntrk3a
XM_036953120.1 mRNA downstream 111223 65111274 ~ 65365998 (-) False ntrk3a
XM_021568376.2 mRNA upstream 9339 65487387 ~ 65509066 (-) False det1
XM_021568384.2 mRNA upstream 9339 65487387 ~ 65509066 (-) False det1
XM_021568395.2 mRNA upstream 9339 65487387 ~ 65509066 (-) False det1
XM_021568404.2 mRNA upstream 9339 65487387 ~ 65509066 (-) False det1
XM_021568425.2 mRNA upstream 57231 65535279 ~ 65571025 (-) False zcchc14
TU196875 other downstream 93348 65383437 ~ 65383873 (-) True G173121
TU195797 other downstream 391033 65085572 ~ 65086188 (-) True G172141
TU194766 other downstream 1308823 64165963 ~ 64168398 (-) True tmem117
TU194598 other downstream 1513400 63959523 ~ 63963821 (-) True LOC110501772
TU193660 other downstream 2326370 63146774 ~ 63150851 (-) True LOC110493507
TU196928 other upstream 56423 65534471 ~ 65536781 (-) False zcchc14
TU196931 other upstream 56423 65534471 ~ 65536781 (-) False zcchc14
TU196932 other upstream 56423 65534471 ~ 65536781 (-) False zcchc14
TU196934 other upstream 56423 65534471 ~ 65536781 (-) False zcchc14
TU196935 other upstream 56423 65534471 ~ 65536781 (-) False zcchc14

Expression Profile