RNA id: TU196050


Basic Information

Item Value
RNA id TU196050
length 1362
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G172388
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65483075 ~ 65484436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttggTTCCGTTTTTCTGCAGTATCATTATGACTGAATTATATGAGAAAggagatacactacatggccaaaaatatgtggacacctgctcatcaaacatctaattccaaaatcatgggcattaatatggagttggtcccccctttgctgctataacagcctccactcttctgggaaaaatgtccactagatgttggaacattgctgcagggacttgcttccgttcagccacaacagcattagtgaggttggacaTTAATGTTGGGCGATTAGCACTGGCTAATcgctgaggtcagggctctgtgcaggccagtcaagttcttctgcAACgacctcgacaaaccatttctgtatagacctcgctttgtgcatgggggcattgtcatgcgtaaacaggaaagggccttccccaaactgttgccacaaagttgtaaatacaaaattgtctagaatgtcattgtatgctgtagcattaagatttcccttcactggaactaaggggcctagcccaaaccatgaaaaacagccccagaccattattcctcctccaccaaactttacagttggcactagcattcaggcaggtagcattctcctttTACCCGTCAAAGCCAGATTCGTCCCTCGGACTGCTAGagagtgaagcgtgattcatcactccagagaaagcatttctactgctccagagtccaatggcagcgagcttcacaccactccagccaacactttgcattgctcatggtgatcttatTCTTGTGTGTGGCTCCTCGGCCATGGaatcccatttcatgaagctcccaaagaACAGTTCtgactgacgttgcttccagaggcagcttGGAACTCGGGAGTGAGTGTCGCAACCAAAGACAGACTATTGGCAGtagcactcggtggtcctgttctgtgagcttgagtGCCCTACCATTTTGCGGtcgagctgttgttgctcctagacgtttccaattCACATTTCCAATACAGTTGACCGGAGCTGCTCCAGCATGGCAGAaatgtgacgaactgacttgttggaaaggtggcatcctatgacgatgccagGTTgatagtcactgagctcttcagtacgggcttTTCTACTGCTAATGtctgtctatgaagattgcatggctgtgtgctcgattttatacacttgtcagcaacatgtggctaaaatagccgaatcccctcatttgaagggctgtccacatacttttgattaTGTAGTGTACATGTACACAGACATCCTCCCACTCCCACAGAAAGTTACAGTCAGATCACACCTCTTATTCCACTGCTCAGCCGAGACTGTTCACTCCACATTTCCTACAGGCAGAGAATCCCAAGAATGGCGAATCCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196049 lncRNA upstream 4 65482621 ~ 65483071 (+) True G172387
TU196048 lncRNA upstream 614 65482192 ~ 65482461 (+) True G172386
TU196047 lncRNA upstream 933 65481723 ~ 65482142 (+) True G172385
TU196041 lncRNA upstream 7557 65475310 ~ 65475518 (+) True G172379
TU196010 lncRNA upstream 44692 65436992 ~ 65438383 (+) True G172350
TU196051 lncRNA downstream 3603 65488039 ~ 65488869 (+) True G172389
TU196150 lncRNA downstream 129786 65614222 ~ 65618491 (+) True G172472
TU196151 lncRNA downstream 131301 65615737 ~ 65617095 (+) False G172473
TU196152 lncRNA downstream 131301 65615737 ~ 65617761 (+) True G172473
TU196177 lncRNA downstream 177404 65661840 ~ 65662637 (+) True G172495
XM_036953106.1 mRNA upstream 458210 64866284 ~ 65024865 (+) False LOC110493825
XM_036953095.1 mRNA upstream 458210 64866285 ~ 65024865 (+) True LOC110493825
XM_036953047.1 mRNA upstream 723682 64666137 ~ 64759393 (+) False akap13
XM_036953227.1 mRNA downstream 46690 65531126 ~ 65536782 (+) False map1lc3b
XM_021568438.2 mRNA downstream 109032 65593468 ~ 65648660 (+) False jph3
XM_021568445.2 mRNA downstream 109032 65593468 ~ 65648660 (+) False jph3
XM_021568559.2 mRNA downstream 308153 65792589 ~ 65801972 (+) True lcat
XM_021568592.2 mRNA downstream 327794 65812230 ~ 65821040 (+) True pla2g15
TU193612 other upstream 1604842 63873248 ~ 63878233 (+) True G170150
TU193588 other upstream 1652755 63820461 ~ 63830320 (+) True G170131
TU192528 other upstream 2697432 62785358 ~ 62785643 (+) True G169130
TU190972 other upstream 3602651 61879770 ~ 61880424 (+) True LOC118936783
TU190931 other upstream 3755621 61726959 ~ 61727454 (+) True G167609
TU196081 other downstream 46710 65531146 ~ 65536787 (+) True map1lc3b
TU196056 other downstream 109081 65593517 ~ 65640976 (+) False jph3
TU196057 other downstream 109081 65593517 ~ 65640976 (+) True jph3
TU196344 other downstream 451160 65935596 ~ 65936133 (+) True G172639
TU196564 other downstream 778190 66262626 ~ 66266023 (+) True LOC110494096

Expression Profile