RNA id: TU196972


Basic Information

Item Value
RNA id TU196972
length 1137
lncRNA type antisense_over
GC content 0.39
exon number 4
gene id G173201
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65608539 ~ 65620372 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacctgctgctagtaaaATCTACTATTAAGGCCTACACATAGACCTGCTGCTAGTAAGGCCaactagtaaggcctacacatggacctgctgctagtaacatctagtAgtaaggccTACACAtagacctgctgctagtaacatctactagtaagGCCTACACATAGACCTGCTACTAGTAAGGCCTACACATGGACCTGCTACTAGTAAGGCCAACTAGTAAGGCCTACACATGCACCTGCTGCTAGTAAGGCCTACTAGTAAGGCCTACACAAGGACCTGCTGCTAATAAGGCCTACTAGTAAGGCCTACACATGGACCTGCTCCAAATAAGGCCTACTAGTGATTTACACCTTCCACTTAAGTCCGCCCTTTTCCGCACAGTTGTCCACATCCTCATCAGGGCAACTCCCTTGAAAAGTGTTCTGTGGTCGCAGAGATTTAGGGACTGGACGTACGAATTGGATCATTTAATTTGAGTTGACCAAGAGGACAGCAAAGAAGCGGAAGGTGTAAATTATGGACCTGCTGCTGGGTCTTACCTGGACATGGCGATCTCAGCCTTCTGATTGGCGATGTCCGCAGCCTTTTCGGCCGTGTCCACAGCCCGGTCCACCTTCTCTCTGATCTTACTGGCTCGGAGGGGGATTAGGTTCTTCCTTTTGCCGCTCACCAGGACGTTCTGCTTGTACTTGCCCTCCTCCTTGGTCCCGTCAGGGAAGGTGGTGCAGCCGTACCCGTGCCGCTTGTTTCCCACCCACTCACCCTCATAGTGCAGGCCGTCCGAGCGCCGGCTCACCCCACAGCCCGTGCGCTTGTCGTTCTTCCACTCGCCGCAGTAGGTCTCCGTTGCCGTGGCGTCCACATCGTCCTCGGCGACGGCCAGCTCGGCTTCGCCCTCTCCCAGGCTGATGGTGGAGTTGATGTCAGAGTTTACCGAGCTTACCGTGCTCATGCCCGCCTCACTGCGGAACGAGCTCTGCTTGGAGCGCTGGCTGGCCAGGGAGCTCTTGGACTCTGACTTCCTCAGTTTGAGTCCGCTGAGGATGGAGCGACCTCGGAACAGACCCTTTTTCTTGCCCTTCAGCAGCTCTGCCTCGCTGTGAGCAGTGAGCACGAAGCCCCCCCGCGACACTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197012 lncRNA downstream 33224 65574375 ~ 65575315 (-) True G173239
TU196941 lncRNA downstream 68639 65536994 ~ 65539900 (-) True zcchc14
TU196930 lncRNA downstream 77107 65530911 ~ 65531432 (-) False zcchc14
TU196987 lncRNA downstream 83411 65524422 ~ 65525128 (-) True G173214
TU196808 lncRNA downstream 119608 65487883 ~ 65488931 (-) True det1
TU197074 lncRNA upstream 34260 65654632 ~ 65658304 (-) True G173293
TU197078 lncRNA upstream 41480 65661852 ~ 65662637 (-) True G173297
TU197090 lncRNA upstream 73412 65693784 ~ 65694028 (-) True G173309
TU197107 lncRNA upstream 101749 65722121 ~ 65722321 (-) True G173326
TU197109 lncRNA upstream 103587 65723959 ~ 65724172 (-) True G173328
XM_021568425.2 mRNA downstream 37514 65535279 ~ 65571025 (-) False zcchc14
XM_021568376.2 mRNA downstream 99473 65487387 ~ 65509066 (-) False det1
XM_021568459.2 mRNA upstream 30707 65651079 ~ 65665571 (-) True klhdc4
XM_021568487.2 mRNA upstream 64889 65685261 ~ 65715957 (-) True slc7a5
XM_021568509.2 mRNA upstream 110359 65730731 ~ 65741201 (-) False LOC110493906
XM_021568500.2 mRNA upstream 110359 65730731 ~ 65752045 (-) True LOC110493906
XM_021568519.2 mRNA upstream 142349 65762721 ~ 65778516 (-) True LOC110493917
TU196935 other downstream 71758 65534471 ~ 65536781 (-) False zcchc14
TU197163 other upstream 212969 65833341 ~ 65839074 (-) False G173370
TU197164 other upstream 212969 65833341 ~ 65839074 (-) True G173370
TU197229 other upstream 301478 65921850 ~ 65922229 (-) True G173431
TU197458 other upstream 657449 66277821 ~ 66298314 (-) False LOC110494122
TU197514 other upstream 715040 66335412 ~ 66338386 (-) True G173675

Expression Profile