RNA id: TCONS_00028423


Basic Information

Item Value
RNA id TCONS_00028423
length 3346
RNA type mRNA
GC content 0.39
exon number 10
gene id XLOC_014305
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43884120 ~ 43901467 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGACGAGCGCGATGGCGTCATGACGCAAGTCTCCGCCTCTCCTGCTGAAGGAGCGGAAGTTCCGTTGTGACCTGGGATAGCAAGCGCATCTCCTCACATTGTATGTGTGGCAACAACATGTCTGTACCCCTGCTCGCTGAAGCCGTGACGGTGCCTGGGACGGAGAAGGAGACGGCTGTGGTGATCTTCCTTCATGGCTTGGGCGATACAGGACACGGCTGGGCTGATGCCATGACATCGATTCGACTGCCGTACATCAAATACATCTGCCCACATGCgcCCAGAATCCCTGTAACGCTCAACTTGAAGATGACCATGCCGTCATGgTTTGATCTGATGGGCTTAAGCCCGGAATCACCGGAGGATGAAGCAGGGATTAAGAGAGCAGCAGAGAACATAAAAGCCATCATCGATCACGAGGTAAAGAACGGTATACCATCCAATCGTATTGTCCTCGGGGGCTTCTCTCAGGGTGGAGCTCTGTCTCTCTACACCGCTCTGACCTCTCAGCAGCAGCTCGCTGGCGTCGTCGGACTCAGCTGTTGGCTTCCCCTTCATAAGACTTTCCCACAGGCTGCAGGTGCGAGTGCAAACAAGGACACTCCCATTCTTCAGTGTCACGGTGAGATGGATCCCATGATCCCGGTGCAGTTTGGGGCCATGACAGCAGAGAAGCTCAAGACCATTGTGTCTCCAGAGAATATCACCTTCCGCACCTACCCGGGTCTCATGCACAGCTCCTGTCCTCAGGAGATGTCTGCTGTGAAGGACTTCATTGAAAAGCAGTTGCCCCGAGTCTGACCTCATTCTAACTCACTGTGACCCTTAGACACTGACCTCTCACCTCCGACCGGCCATTCTCCCACAGGAAACAGCCATGATCCCCctgcaaaccacacacacacatacatgcgcgTCAGTTGTACATACTGTGAACATGCATCACATGCATACCCTATCATCTCATCTCACGCCTTTTGTTTTTGATCTCATTCATCAGTAGACGTTTATTGAAttaaaatcttattattattatttggtttcAATGCACACTTTAACATCAtgaaattattcttattattatttttatttttaagggagATTCTTCATTTTACATTCCTGTAAGCATTAAATCTTAAAATGTTTCCCTGTATCTCTCTCTTTTtccaaaatttcttttttttcttcataagcAATGCAGGTAAGATTTTACTAGATGGGAGATGTGCGGTGCGTCTGGAGTGATCTCCATCACGTGACGCTGCTCTGCATGCTTTCACCggtcagtgtatcttttggtcattggattttcattttagaaaccgATAATgaaaaaggtaatgattcacgAAGAACATCAAGTAGTTGCTTCGTAccgtttttctttttaaagtctTCAGgtgatttaaaaacacaaatgttaCAGCACAATGCCTGCCTCAGTGTGTGATACAATCCTCTAACTCCACCCCTTTATTCTATAGTCAATCACAATGCGTCATTAGTTAGACGGCCactctcattttcatttaaatatttcatgATTAACCACATAAGGACTATTTACCTTCAGAAACGGgtattgaaaaattaaaaatgagtCGTTTTTTGATTTTCGTTATAAAATTAAAAGTCGAAAATTGAAATTTattgcgtttttttttattttcgttttttttttttttttttaagatttatttttggcctttttgccttttttaagtggataggacagtattccagacaggaagcgaagtgggagagagaggggggtTAGGGACaggaaatgtcctcaagccggGTTTCGAACTCGGGACACCCTGAAGTGCTACAGCACCATATGTCGACTCGCTAACGACTTGATTTTCGAATGGTTTtgaattttgaaataaaaatataaaaaatgactcGTTTTTCGTTCTTATGGTGAAAAGCAAAAcgcaaaaaattatttgtttgaatttttttttatttcaaattacaaaaaataaaatcatgagaaaacaaaaatgaatgaagaattttttttttagattccgAAACCAGATAGGCCGACTCATTTACGGCGACGCAATGCTGCCACACACAGGCTAGCCTACTATAGGCTATTATTTATTTCCACTTAATATCGTTATAAAAGGTATGTTCTTTATTTTGTCAAGACATATTTTCCCTTATTAAGACAAGGCATTTCTCATATAAGGGTCGGTTATaggctatatatttattttttgttaggaTGTTTTAAATGAAACAACCTTTATTTTGACATTACATGCAAGCGCTAGGTTGCTTTACTAAACACTTTAAcagttttaatattgttaaaaccATAATACTTCCACTTCCCGAAGTTTTACcatgaatacttttttttttacgtttgagAGAGGCATTAATACAGTTGTTCGTTACGCACATTTCAATAATTTCATGAATTAAAATGAAGAATTTTATCTGAAAGGAGGCATGCTGCACAAACACCCTGGTAAGGATCCCGTGTCTTTCAAAAGCGGACTATCGCTAAGCTTGCCGTTGTGTGCATGCATCATCACCCCTCTACAGGGGATCTATCCATAAGTTTAATATTTAACACGGAGAGATGAGCAATGATTCCAAACGAATGCTCAATGTTACTGTCACTTCTGAAGTGGAAGTGATTTTTAACAGTaaactttattttcagaaaactgTTCAGCACTGCAAATACTACATCAGTTATGTTGTTCCATATAACCGGCTTcaatgaggaaaatatgtcttgaCAAAATCccgttataataaaaaaataccttCTATAACGATATTAAGTGGAAATATATAATAGCCTATACTAGGCTAGCCTGTGTGTGGCAGCATTGTGCACCGTGAAAGAGTGTATCTGGTttggaatataaaaaaaataaggtctttatttgtttttgttttctggtgcttttattttttgttaatcgaaataaaaatctaataatttttgaatttagtttttctgtttttcaccattaaaaaaaagcctttttttatatttacgctttaaaattctaaaacaaaaatcaaaaaacgCATCGAGTATAAATGttcgtttttttaattttaaaacaaaaatcaagttAGTTTTTCAATATCTtaaactaatataatatattagtttttcattttagtttttcaatatccgtttctaaaatgaaaattcaatgaccaaaagatacactgaccGACCTTTTACCTACGTTGCATGTCGGCCCTGGGCCTTCATCCAGATGCTGCAACTCATACTTGTGCTTTTTGTTTACTAGAAATACGAGAAAGGCAAGCAAAGGCTCTAATAAACTAAGCAAATTGAAA

Function

GO:

id name namespace
GO:0002084 protein depalmitoylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008474 palmitoyl-(protein) hydrolase activity molecular_function
GO:0052689 carboxylic ester hydrolase activity molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
ko00564 Glycerophospholipid metabolism

ZFIN:

id description
ZDB-GENE-040426-1715 Predicted to enable carboxylic ester hydrolase activity and palmitoyl-(protein) hydrolase activity. Predicted to be involved in protein depalmitoylation. Predicted to be active in cytoplasm. Orthologous to human LYPLA2 (lysophospholipase 2).

Ensembl:

ensembl_id ENSDART00000139684

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030043 lncRNA upstream 79710 43800832 ~ 43804410 (+) False XLOC_014302
TCONS_00030044 lncRNA upstream 79710 43801177 ~ 43804410 (+) True XLOC_014302
TCONS_00030041 lncRNA upstream 92544 43787003 ~ 43791576 (+) True XLOC_014300
TCONS_00030042 lncRNA upstream 93404 43787142 ~ 43790716 (+) True XLOC_014301
TCONS_00028415 lncRNA upstream 159265 43715970 ~ 43724855 (+) False XLOC_014297
TCONS_00029734 lncRNA downstream 1015632 44917099 ~ 44959698 (+) False XLOC_014314
TCONS_00029733 lncRNA downstream 1015632 44917099 ~ 44959698 (+) False XLOC_014314
TCONS_00029732 lncRNA downstream 1015632 44917099 ~ 44959698 (+) True XLOC_014314
TCONS_00030045 lncRNA downstream 1457810 45359277 ~ 45365727 (+) True XLOC_014315
TCONS_00030046 lncRNA downstream 1825747 45727214 ~ 45728062 (+) True XLOC_014317
TCONS_00028422 mRNA upstream 3169 43878049 ~ 43880951 (+) True XLOC_014304
TCONS_00028420 mRNA upstream 50125 43822968 ~ 43833995 (+) False XLOC_014303
TCONS_00028421 mRNA upstream 50125 43828104 ~ 43833995 (+) True XLOC_014303
TCONS_00028419 mRNA upstream 97180 43780970 ~ 43786940 (+) True XLOC_014299
TCONS_00028418 mRNA upstream 115399 43753995 ~ 43768721 (+) True XLOC_014298
TCONS_00028426 mRNA downstream 4204 43905671 ~ 43960448 (+) False XLOC_014306
TCONS_00028427 mRNA downstream 4204 43905671 ~ 43960753 (+) True XLOC_014306
TCONS_00028428 mRNA downstream 67896 43969363 ~ 43976522 (+) True XLOC_014307
TCONS_00028429 mRNA downstream 77347 43978814 ~ 43980876 (+) True XLOC_014308
TCONS_00028430 mRNA downstream 85922 43987389 ~ 43989462 (+) True XLOC_014309
TCONS_00028411 other upstream 218609 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028401 other upstream 432173 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028380 other upstream 803060 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028379 other upstream 806241 43077744 ~ 43077879 (+) True XLOC_014279
TCONS_00028365 other upstream 968579 42915419 ~ 42915541 (+) True XLOC_014274
TCONS_00028433 other downstream 108006 44009473 ~ 44032164 (+) False XLOC_014312
TCONS_00028436 other downstream 1607398 45508865 ~ 45508981 (+) True XLOC_014316
TCONS_00028450 other downstream 2342153 46243620 ~ 46280931 (+) False XLOC_014327
TCONS_00028459 other downstream 3397699 47299166 ~ 47309383 (+) False XLOC_014336
TCONS_00028462 other downstream 3405156 47306623 ~ 47306738 (+) True XLOC_014337

Expression Profile

//