RNA id: TU197163


Basic Information

Item Value
RNA id TU197163
length 5492
RNA type TUCP
GC content 0.44
exon number 2
gene id G173370
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65833341 ~ 65839074 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTAGTGCTGTGTGTATTGAATGCTACATACAGATATCTTAGCATGAATGTACACATACTGTACGTTGTcacgtaattttttttttttaacgtcATTCACATACTACAATTTGAAAAAAAGCGATAAGAGGAATAAGTACTATCTGAAGCACTAATACCTGGGACAGATTACAGGAACTAACACAGCAAGCATGCACAGAACAGAGAAAACAGGGTCAACGGGCAGGGGCTAACTGTTCTGCACTACACTAGATCAAAATTCATGTCAATCACATTCCTAATGACCCTTCCATCAATCaaacaaacacccccccccctacATCCCAAAAGGCCCTGTTAACTCCTTCCAAGAATATAGATATTTATATAGATTTTAAACAATGTTTATATAAATTTGGTATTAATAAACTGAAGAGAAAGACAAAAACGTATACAGTACTTTTACAAAAATAATAAATTCCTAACTGCTCTTTTATGTTGTCTTAATGCCGGATGAAAGACATGAACACATTTAAGAAAAGACAGACAAAAGACAAATGACACCAAATGTTAGCCTACATCAGATGCcaatggaggaaaacaaaacagAGTACAAGGAACagatcaacaacatggaggcAGTCAGATCTGGAGTAGAATGGGTTTCTAATTAACCCTGACCCCAGATTAAGGCCAAACAGTCTTAACTGAATCTGATTATAAAAAGAACCTTCCTCAAAATGATCATTACCATCTCCCATCATAAAACACTGTCAATACTGCACTCAAACCACAAATCCACCACCAAATGGGACAAAACATGACCACTTGAAATGCTTCACttgcaaaaaatgttttaaaaaacacCTGCACACATCAAAAACCCAAATTGAGGTAAATTTGAGCCATTCTGAATGAGACTTAAAAGTCTACTACTTAGACGAGAGGGTAAATCCATAATTTTTGCAATTAAGCTGTAGCAGCCCATTTTGGTAAGGATGCTagcttttatttatattttttaaaggctATAAAAAACAGAAGTTAGCATGACCTGCACAAATATACTGCAGATAAGTTTCTCTGACATACATTGGGTTAACTAAAACTACAGACCTGCCCAAATTCTACTTCACAGCCAGGATTCCATtttcacagacatgattcaacaATCATTCATCCTAAAATTTCAAAAGGAGCACGAAGGGGTCAGAATCCTTGTAGGACTTACAGACAATGTTCTCCTTGGAAACTTGACATACAATCTATCATAACTATGACTttaatgaagaagaaaaaacatttCAGTCCCCATATGATAAAAAATAGTAACATACAAAACAGCTAATGCCGTTTTAGAAACAGACAGTGGAGCTGGTaaacatacatactgtactatatacacacacacacacacacgtagtaaGAGGAAGCTTGATCAGGTTTTTACACGTTTTCAGCAGAGTCTACACTGATCTCGGTAGGAATATCAACTGTATATTAGTGTGAAATATAGATTTCTATACAATTTCTATATAGCAGTGAGATGAAACTTCAGCTGGTTAATCTCCACACCTTTGGGATTCTGGTGCAGTACAATGGTGTTTTGATACAAACATATACTTCCAAATACACTCACAAGCATATGTAATATTTCACAATAGCACAATAAACcctcatgtttaaaaaaaacacacaaaaaaaaaaaaaacacactaatAGTTGTGGAGTTGATACTTATACATAAAAAGCTTAAAAATACTAAAGCACAAAGGGTAAAGAGGTGTCTGATTTTAGTGTATATACATACACTGCTACTACAGTGATATGAGGTTGTGGAAAAGTAACCAATACACAATAATCTCGACCCACTACCCAcccaacaaaaacattttatatcAGCGTTGATACAGCGTAATTGATTcctaaataataaaaaaaaagcaAGAGGCCATCAGCAGACTGTAGCAACTGCTGAAACTTAGCAATAATTCAAGTCTATCCTGGGTAAGAGTATGGAACATTACTGCATGCAGCAACTCTGTAGATGGGTTCTAGAGTGACAACCACTTTTGGCAAGAGAAGAGTTCTGGGTCATGGTGCAACCCTTAACACTTACAGACCTGTCGAGCAGGTTGAGGGGAACTGGTCCACATTCCCTTTCCTATACAAGTCTACAAGGTTACTTATGTACAAATACAAAGCTTTTCATAGACAGAAATGTAGGCTAATGTGGTGATGTACATTTCTTTCCTTTTTTCCTTCTTGGGCAGTTGATTCAAGGATAGAGGAGAAGGTAATTGACCTGGGCCCAGTTTCCCCGAAAGCAGTGGAACTTAGGCTTCTGAGTGTTTTAACGATTCATCTTTCTTACAATGGCCGAAGACATAACATGTGTTACGCaaaacaccacacagagagaagagtcgCTAAGTGCATCGTTGGAgcatgtgtcgatactgataggatcgaaaCAGAAGTATTCCACAATACTGACTACGGATGAGTTCCTAGAGAGATATTATTACCTACCgctgcaaatattgaggcagCTTATTCTAATGCCAATAaaaatgccccccccccaaaaaaaatatcaCTGATTTGGCACATCACTGCACACGTTAggctacacatcatgaaataCAGTATACTGAGACAAATGAGACAGTAGTGTACAGCTAGCAAAATATAACTGAATTTACTGAAcattaaatgtatttcaatatggTTGAAATAGGactatagcctactgtatgtaTGTTTGAGTGCAGTAATCTCAGTTTTCATTTGAAGCATCTTTTTATACGTTGCttgtttgtatcaattgcaaagaTATTGGCAACTGTGCATTTGTAGTTAACTTTGTTCACAGAGAGGGATAAACCATGTGATTCTAAGTTTAGTGGAGATCTTGTGTATATAAAGTGACGCGGGAAGACGAAAAAAGCATTTAACGTCGCACTTCgctgttctacgagtggtctgaggcaggagTTAGATTACGAGCGCTTTCAAGTGCACCGCCAATAACGATGGCTTtgggaaacagctcagagattgAACGATGCTCCTACAAAAGGTTCTAACGAttaacttagccttaagatgcttttcaGAAACTGGGCCCTGGACTAGAACATCCACCCTAGAGTTTGAAGTGAAAGACATATCCTTGATGGTTtcttctcctctgtccttcaGATGGTAGCCCTAAAGCAGTGACACTTGGCAGTACAATGACAAGCTGTGACTTCCATTTTATGAGACAATGATCATTTGTATGGGATTTTGGGGGTAGGGGAAACTGATAACAGTTTCAGATGGGAAGTGAGGTTAGGGATTCTATATGCTCGGGGCAAATTAGGGCAAATGCCAGGGACATTTGCTATGAACTGGAAAATAAGGGAGGGGCGTGACTATATGCAAGTTGGCACAGAGTAACCTACCATTGGGTAACCCCCTCCTTCAGATGTGTGCTGGACTGTGTGCTCCTGCAAGGCTCCCAGGTCTCCAAAGCATTTGAACTGGGCATCTCTGGAATGCACACTCTGATGCTTGGCCAGGTGCTCCCGTTGCTTGAAGCCTTTGTCACAGCTAGCACACTTGTAGGGCTTCTCCCCGGTGTGGACACGCCTGTGCCGATTCAGGTCAGACGAGTACTTGAAGCGCTTCTCGCAGTCGGGGCACTTGAGGGGCTTCTCTCGGGACGGGTCGCAGCGGTGCTGCACGAACTCTGAGGATGACAGGAAGCGGCGGTCACATAGGGAGCACTTTAGGGGCTTCTCTTGGCAGTGCGAGTTCTGATGTCGCTGCAGTGTCGAACTCTTTTTGTATCCCTTGCCGCACACGTCACATTTGTAGGGCTTGTCTGTGTCCCTAGATGAAGAGGACGACTCACCGCACTTGTGGCGCAGCAGCTCTCCTGACTGACTGAATTCCTTCTGGCAGGACGCGCACTTGAACAGGTTCTCCATGCCGTGGACGTGCTGGTGGTACAGCAGATGGGATGGCTGCAGGAAGCCTTTGTCGCAAAGGTTGCATTTGAAAGGGCGGTCAGAAGGGTTTTTGTGTGTGCGCCTGTGGCGCACCAGGGCATACTGCTGTTTGAAACTCATCTGGCACTCCTCACAGTGGAAGGGACGCTCCTCAGAGTGAGTGCGCTCATGCTGCCGCAGGTCTGATGGACGCTTGAAGCCCTTTCCACAGGTGGCACAGCGGAAGGGGCGTGCCCCTTGTGGGTGGCATGGATGATGCAGCAGTTCAGAAGACTCCTTGAAGTGCAGTTCACACAGGTTGCACTTGAACAGGTGCTCTCCGGAATGGGCGTACATGTGGCGCACCAGGTGGGAGCGGTGCTTGAAGCTCTTGTCACACACAGCACACTTGTATGGGCGCTCAGAGCTGTGGGTGCGCTGGTGATGGGCCAGGTGAGAGGACTGGCTGAAGCTCTTGTCACACGTGTCACACTTGaagggcttctctcctgtgtgcacACGCTCGTGGCGGGCCAGCTCTGACAGGTGCCTGAAGCCCTTCTGGCAGACAGAGCACTTGTAGGGCCTGTCACGGGCCGATGGAAATGTAATTGAGGAAGAGGATCCCACTGTTGCACTCCCACTGGAAGAGGCTCCATCAGCAGACGGCTGCTGAGGGTTGGTGGCAGAGGAGCTGGGCGTGGTGTTTCCAGAGGAGCCCGGTCGGTAGGTCTTCTCACAAATGGAGCATTTCATGGGGTTGGTGCTGTTGTGTGAGGTGTGGTGCTGTGCCAGcgaggtgaggagggagaagcCCAtcttacacacaccacacacaaaggGCTTCTGTTCTACCTGCACACATTGGTGCTCCAGCAGATCAGTGGCCTGGTGGAAGATCTTCATGCACTGGGTGCATTGGAAGGAGCGGTCCTGGCTCACCATACACTGGTGCTCATGTGGGTTGGCCAGGTGGGAGATGTCGTGGCCACATGCCCCACACTTGTGGCCGCCCTCGCCCCCTACCTGCAGAGAAGGCTGCTGTACCTGGGCagggtgctgctgctgctgctgttgcccatgctgctggctgtgctgctggcCATGCTGGTGCTGCTGCTGTGACTGCTGCAGAGCAGGGTCAGGCTGCAGGACGATACCGTAGACAGCACAGCCCAACGCGTTCTCCGCCCCTGGTGGTATGGTGTGCACCACCGGAGGAGGAGCAACAGCGTGCTGCTGCCACGCCTCGGACATCCTGGCTCTCGTGTAGGGATTCAGTTTTATATTGTACTGGGTCTTTTTATGAAGAAAAATCAAAGGTACATTGATCGGTGGACGGGGTGGAAAATCTCAGTAACTTAGTCTGCCATGTCAGTGACGAACATAAGCACGTAGAAAATATGACAAAGGGCTTGTTTCTAAGATGCAATCAATTGTGTCTGAAAATAATGTGCAGAGGAATAACACCTGCTGCAAAGACATTTAAATTTAGAAAAAAGAAAATACACCGTCTCCACCTGTCTTCAAGTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197141 lncRNA downstream 29991 65799892 ~ 65803350 (-) True G173349
TU197109 lncRNA downstream 109169 65723959 ~ 65724172 (-) True G173328
TU197107 lncRNA downstream 111020 65722121 ~ 65722321 (-) True G173326
TU197090 lncRNA downstream 139313 65693784 ~ 65694028 (-) True G173309
TU197078 lncRNA downstream 170704 65661852 ~ 65662637 (-) True G173297
TU197190 lncRNA upstream 36140 65875214 ~ 65877945 (-) True G173393
TU197199 lncRNA upstream 43363 65882437 ~ 65883420 (-) True G173401
TU197226 lncRNA upstream 75989 65915063 ~ 65917401 (-) True G173428
TU197227 lncRNA upstream 80924 65919998 ~ 65920259 (-) True G173429
TU197234 lncRNA upstream 91483 65930557 ~ 65930764 (-) True G173436
XM_021568612.2 mRNA downstream 3601 65821657 ~ 65829740 (-) True usb1
XM_021568604.2 mRNA downstream 3612 65821657 ~ 65829729 (-) False usb1
XM_021568620.2 mRNA downstream 3613 65821657 ~ 65829728 (-) False usb1
XM_021568547.2 mRNA downstream 40544 65782330 ~ 65792797 (-) False ccdc135
XM_021568538.2 mRNA downstream 43709 65782330 ~ 65789632 (-) False ccdc135
XM_021568680.2 mRNA upstream 192949 66032023 ~ 66069982 (-) True snrkb
XM_021568721.2 mRNA upstream 245152 66084226 ~ 66118713 (-) True znrf1
XR_002469227.2 mRNA upstream 305772 66144846 ~ 66146269 (-) True LOC110494064
XM_021568786.2 mRNA upstream 371362 66210436 ~ 66223350 (-) False si:dkeyp-50b9.1
XM_021568881.2 mRNA upstream 459114 66298188 ~ 66299637 (-) False LOC110494122
TU196928 other downstream 296560 65534471 ~ 65536781 (-) False zcchc14
TU196931 other downstream 296560 65534471 ~ 65536781 (-) False zcchc14
TU196932 other downstream 296560 65534471 ~ 65536781 (-) False zcchc14
TU196934 other downstream 296560 65534471 ~ 65536781 (-) False zcchc14
TU196935 other downstream 296560 65534471 ~ 65536781 (-) False zcchc14
TU197229 other upstream 82776 65921850 ~ 65922229 (-) True G173431
TU197458 other upstream 438747 66277821 ~ 66298314 (-) False LOC110494122
TU197514 other upstream 496338 66335412 ~ 66338386 (-) True G173675
TU197536 other upstream 536152 66375226 ~ 66390766 (-) True G173696
TU198454 other upstream 853334 66692408 ~ 66692850 (-) True G174505

Expression Profile