RNA id: TU196342


Basic Information

Item Value
RNA id TU196342
length 316
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G172637
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 65929364 ~ 65929679 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTAGccattgtttttgttttcttaagTAAGGAAGATCCAAATGCAGGCGTTTCAGCCAAGCTCAATGCatttggtggtggtggggcagccagcagaaaatacagagcgtaggggttggtaatgttctctagttgcgccgtgattggctcagtgttctgtcattcatggaaacactacatcaccacaaaatctacagggagagattgaaaattcAAGTCCCTTGGGTGCTTCTATAGATGTACATTAGAattgcccatccaagaaggctcaaggtaattggccacagataatattatgtcaaatcacgttatatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196335 lncRNA upstream 10146 65918913 ~ 65919218 (+) True G172630
TU196296 lncRNA upstream 59096 65869329 ~ 65870268 (+) True G172592
TU196284 lncRNA upstream 80198 65848953 ~ 65849166 (+) True G172586
TU196281 lncRNA upstream 82132 65846997 ~ 65847232 (+) True G172583
TU196280 lncRNA upstream 83827 65842248 ~ 65845537 (+) True G172582
TU196370 lncRNA downstream 36194 65965873 ~ 65970958 (+) True G172658
TU196352 lncRNA downstream 69216 65998895 ~ 65999564 (+) True LOC110494008
TU196314 lncRNA downstream 430318 66359997 ~ 66363470 (+) True LOC110494202
TU197656 lncRNA downstream 600436 66530115 ~ 66530338 (+) True G173804
TU197657 lncRNA downstream 600773 66530452 ~ 66530710 (+) True G173805
XM_021568646.2 mRNA upstream 11998 65884793 ~ 65917366 (+) True LOC110493994
XM_036953346.1 mRNA upstream 63659 65852513 ~ 65865705 (+) True LOC110493986
XM_036953361.1 mRNA upstream 63802 65852510 ~ 65865562 (+) False LOC110493986
XM_036953388.1 mRNA downstream 13480 65943159 ~ 65958750 (+) True LOC110494001
XM_036953398.1 mRNA downstream 46066 65975745 ~ 66031253 (+) False LOC110494008
XM_036953395.1 mRNA downstream 46069 65975748 ~ 66029763 (+) False LOC110494008
XM_036953407.1 mRNA downstream 46069 65975748 ~ 66030944 (+) False LOC110494008
XR_005037525.1 mRNA downstream 46070 65975749 ~ 66001540 (+) False LOC110494008
TU196056 other upstream 288388 65593517 ~ 65640976 (+) False jph3
TU196057 other upstream 288388 65593517 ~ 65640976 (+) True jph3
TU196081 other upstream 392577 65531146 ~ 65536787 (+) True map1lc3b
TU193612 other upstream 2051131 63873248 ~ 63878233 (+) True G170150
TU193588 other upstream 2099044 63820461 ~ 63830320 (+) True G170131
TU196344 other downstream 5917 65935596 ~ 65936133 (+) True G172639
TU196564 other downstream 332947 66262626 ~ 66266023 (+) True LOC110494096
TU197812 other downstream 812141 66741820 ~ 66742213 (+) True G173938
TU197931 other downstream 1025845 66955524 ~ 66972455 (+) False LOC110494451
TU198150 other downstream 1309211 67238890 ~ 67239896 (+) True LOC110494472

Expression Profile