RNA id: TCONS_00028426


Basic Information

Item Value
RNA id TCONS_00028426
length 3466
RNA type mRNA
GC content 0.53
exon number 20
gene id XLOC_014306
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43905671 ~ 43960753 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACGCAGATCATTGTCCTATGAAATGAGAGCATGACCAGCAAACACAGCCACGAGCACCACCCCAAATGATTTTACAgttgtttatcatttatttttatatcatttcTGACATGGTCAAAGGTCTGCTGCCCGATAACAATGGCGATATGAGCTTCTGACACGCCGCTCGCCGTGGTCGTTTGTGTGTCAACGCTTCATGGAAACGTCATGAGGTACGCAGGCCGTCCGCAGTCACGCTGGCTGAGTGTTGAACACTGAATGTGGGCTCAGCGGCTCCTGCCATGGGGAATACAGCCACCAAGTTCCGTAAAGCACTTATCAATGGAGATGAAGGCCTGGCCTGCCAACTCTATGAGAGCAACCCTCAATTTAAAGAGGCTCTGGAGCCCAACGCCTCTTATGGGGAGCCCTATCAACACAACACACCCCTGCATTATGCCTCACGCCACGCCATGACCCGCCTTATCAGGTCTTTCCTGTTCTGCAAAGATGGAAACCCCAACAAGTGCAATGTCCACAATGAGACTGCGCTGCACCTGCTCTGCATGGGGCCGCAGATCCTGCTGGGTGAAGGAGCGCTGCAGCCGCGCTTCAGCCGGCCCCAGGAGGACCAGCAGAAGCGGGCTGAGTGTCTCCAGATGATCCTGCAGTGGACCGGAGCCAAGCTGGACCAGGGAGAGTACGAGAGAGCCAACGTCAACGCCACCGACAACAAAAAGAGCACCTGCCTGCACTACGCGGCGGCTGCCGGCATGAAGAACTGCGTCGAGTTGTTGGTGAAGAACGCTGCAGATTTGTTTGTGGAGAACGAGGACAGGGAGACGCCGTGTGACTGCGCCGAGAAGCAGCATCATAAGGATCTGGCGCTCAGTCTGGAGTCGCAGATGGTTTTCTCTCAGGTTCCAGGAGCTCAGGAGATCGAAGCGGAGTACGCTGCTCTTGACCGCAGAGAGCCGTATGAGGGACTGAAGCTGCAAGACCTGCGACGCTTAAAAGATATGTTGATCGTGGAGACGGCGGACATGCTGCAGGCTCCTCTCTTCACCGCTGAGGCTCTTCTGCGAGCTCATGACTGGGACCGAGAAAAGCTTCTGGAGGACTGGATGTCTAATGCCGAGGAGTGCTGCCAGCGTTCAGGTGTTCAGATGCCAACCCCTCCACCCAGCGGCTACAATGCCTGGGACACCCTGCCTTCACCCCGAACCCCCAGAACAACCCGTTCTTCCGTCACCTCTCCTGATGAGATCAGCCTGCTGTCGCCCACTGACGGCCTTGCTCTGTGTGGGATTTGCATGAGCAGCATATCTGTGTTTGAGGACCCCGTGGACATGTCATGTGGACACGAGTTCTGCCGGGCATGCTGGGAAGGGTTTTTAAATCTAAAGATCCAAGAAGGGGAGGCTCATAACATCTTCTGCCCTGCTTACGACTGCTTCCAGCTGGTTCCAGTGGAGGTCATTGAAAGCGTCGTCTCCAGAGAAATGGATAAGCGCTACCTGCAGTTTGACATTAAGGCGTTTGTGGATAATAATCCTGCAATCCACTGGTGCCCTGTAGCCAGATGTGAAAGAGCCGTTCGTCTGACTCGACCAGGCCCTGGAGCTTCTGACCCGCTGAGCTTCCCGTTGCTGAAAGCCCCTGCTGTAGACTGTGGAAAAGGACATCTCTTCTGCTGGGAGTGTCTTGGGGATGCTCATGAACCCTGTGACTGTGAAACATGGAAGATGTGGCTGCAGAAAGTGTCTGAGATGAAGCCTGAAGAACTGGCTGGTGTGAGCGAAGCTTATGAAGATGCTGCCAACTGCCTGTGGTTACTCTCCAACTCCAAACCCTGTGCCAACTGCAAATCCCCCATCCAGAAAAACGAAGGCTGTAATCACATGCAGTGTGCAAAGTGCAAGTATGACTTTTGCTGGATCTGTCTTGAAGAGTGGAAGAAACACAGCTCCTCTACTGGAGGATATTATCGCTGCACGCGCTACGAGGTTATCCAGCAAGTAGAGGAACAGTCTAAGGAGATGACTGTGGAGGCAGAAAAAAAGCACAAGAGTTTTCAGGAACTCGACCGTTTTATGCATTATTACACACGATATAAAAACCACGAACACAGTTACCAGTTAGAAGAACGACTCCTGAAAACAGCCAAAGAAAAGATGGAGCAACTGAGCAAAGCTTTTATTGGAAGGGATGGAGCTCCACCTGACACCACATTTATTGAGGACGGTGTTCATGAGCTTCTCAAGACCCGACGCATCCTTAAGTGCTCTTATCCATATAGTTTCTTCTTGGAGCCCAAAAGCACAAAGAAAGAAATATTTGAACTTATGCAGACGGATTTAGAGATGGTCACTGAAGACCTGGCTCAGAAGGTGAACCGGCCTTACCTCCGCACCCCTCGCCATAAGATCATCAGTGCCACGTATTTGGTGCAGCAGAAGAGGCGGGAGTTTCTGGCCTCTGTGGCTCGAGGTGTCGCTCCAAATGATTCTCCTGAAGCTCCGCGACGCAGTTTTGCTGGCGGGACGTGGGACTGGGAGTATCTGGGATTTGCTTCTCCTGAGGAGTACTCTGAGTTCCAGTACAGACGGAGACACCGGCAGCGGCGACGAGGAGACCTGCTCCGACTGCACAGCCTGCGCAGCAACACTCCTGAACCACATGACTCCAGCGACGCCACCGCAGGTACAGCACTGCCTGAAACACAACACATGAACGAGCCACTGAACGACACTCATACTCACTCtgaaatatgtGCACTTGGATCTCTAGATGAGGATGACCCCAATATTTTACTGGCGATTCAGCTGTCCTTACAGGAGTCCGGGCTGGCCTTGGACCCCGAGCCTCAGGACAGCGACGCCTCTGTTGGTGCCAGCGGCTCCTCTCTGCCCTCCAGACTGGACAGTGTCCCACAGACCTCAGATCCGCCGCGGGCGTCAATGAGCAGCTCTGAGCTCCTGGAGCTGGGAGACAGCCTTATGAGACTAGGCGACATCAGCAGCCGCTATACACCCTTTAACATCAACTCCTACCCCGATGCCTTGGGCACCGCCTTCAGCCCTAGTGACCCGGACTGTCTGGATCCCTCCACCAATGCCAACCTGCTGGGCAACATCATGGCCTGGTTCCACGATATGAATCCGCAGAGCATTGCACTGATTCCCTCATCCGCTTCTGATGCAGGCAATGAAACGCACGCTTTAGGAGAGCCTGCAAAAGCCGAGCAGACTGAAGCGGAGAGTGCTGAGATGGAGAGTAAAGAGGGGGAGGTTTCGGAGTGTGTTGAAGATGCTAAAACGGAGGCTTCAGATCTCACTGTTTGTCCTGAAAGCAGCGCCGATCCGCAGCATCAAATTGTGGAAAAACTAACGTTGCGCGGACATAAAATCAGTTCTGGTGGCCTTAGACGAAATGTGTTTTCTTTGGGTCGAAGATGGAAGGGGTTTTCATGCATTACAAAATAA

Function

GO:

id name namespace
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0031624 ubiquitin conjugating enzyme binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-156 Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human ANKIB1 (ankyrin repeat and IBR domain containing 1).

Ensembl:

ensembl_id ENSDART00000168725

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030043 lncRNA upstream 101261 43800832 ~ 43804410 (+) False XLOC_014302
TCONS_00030044 lncRNA upstream 101261 43801177 ~ 43804410 (+) True XLOC_014302
TCONS_00030041 lncRNA upstream 114095 43787003 ~ 43791576 (+) True XLOC_014300
TCONS_00030042 lncRNA upstream 114955 43787142 ~ 43790716 (+) True XLOC_014301
TCONS_00028415 lncRNA upstream 180816 43715970 ~ 43724855 (+) False XLOC_014297
TCONS_00029734 lncRNA downstream 956651 44917099 ~ 44959698 (+) False XLOC_014314
TCONS_00029733 lncRNA downstream 956651 44917099 ~ 44959698 (+) False XLOC_014314
TCONS_00029732 lncRNA downstream 956651 44917099 ~ 44959698 (+) True XLOC_014314
TCONS_00030045 lncRNA downstream 1398829 45359277 ~ 45365727 (+) True XLOC_014315
TCONS_00030046 lncRNA downstream 1766766 45727214 ~ 45728062 (+) True XLOC_014317
TCONS_00028423 mRNA upstream 4204 43884120 ~ 43901467 (+) False XLOC_014305
TCONS_00028425 mRNA upstream 6722 43885770 ~ 43898949 (+) True XLOC_014305
TCONS_00028424 mRNA upstream 9012 43884183 ~ 43896659 (+) False XLOC_014305
TCONS_00028422 mRNA upstream 24720 43878049 ~ 43880951 (+) True XLOC_014304
TCONS_00028420 mRNA upstream 71676 43822968 ~ 43833995 (+) False XLOC_014303
TCONS_00028428 mRNA downstream 8915 43969363 ~ 43976522 (+) True XLOC_014307
TCONS_00028429 mRNA downstream 18366 43978814 ~ 43980876 (+) True XLOC_014308
TCONS_00028430 mRNA downstream 26941 43987389 ~ 43989462 (+) True XLOC_014309
TCONS_00028431 mRNA downstream 35488 43995936 ~ 43998061 (+) True XLOC_014310
TCONS_00028432 mRNA downstream 43900 44004348 ~ 44006445 (+) True XLOC_014311
TCONS_00028411 other upstream 240160 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028401 other upstream 453724 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028380 other upstream 824611 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028379 other upstream 827792 43077744 ~ 43077879 (+) True XLOC_014279
TCONS_00028365 other upstream 990130 42915419 ~ 42915541 (+) True XLOC_014274
TCONS_00028433 other downstream 49025 44009473 ~ 44032164 (+) False XLOC_014312
TCONS_00028436 other downstream 1548417 45508865 ~ 45508981 (+) True XLOC_014316
TCONS_00028450 other downstream 2283172 46243620 ~ 46280931 (+) False XLOC_014327
TCONS_00028459 other downstream 3338718 47299166 ~ 47309383 (+) False XLOC_014336
TCONS_00028462 other downstream 3346175 47306623 ~ 47306738 (+) True XLOC_014337

Expression Profile

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