RNA id: TU197380


Basic Information

Item Value
RNA id TU197380
length 2922
lncRNA type antisense_over
GC content 0.45
exon number 4
gene id G173570
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66187646 ~ 66190766 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACTCCATGCTGACATAAAGTCTTTATTTCTTTGTCTTTACATGTTCAATACATGGACAGAGAAAGCTTacagtatatgtactgtatgtatatttaaACTTTACATTACACATTTTATGACTAAGCAGGTAAGAGTCAATCCTACTTTCTCTGTGAACAGAAACAATGTTGGGGAGACTCATGAAACCATACAGTCAAACAACTTATTGCTCAATATAAATCAATCaataatactgtaataataataataataatacacgaGAACCAATACACCACAGAAAACTTAATTATATTGTTGTGTAAAAAGAGGAACTCTAGGAAAGAGGAACCAAATGCTGTTTGTCACAATACAATAGTGTTGAGTGTTGGAGTGCTCTTTCAGTTGACCTGCTCTATCTACAGAGCAAGGAGGACCTGGAAGGACTTGGGTTCTTGGACAAGTTAGGGTAGGAGTTAGGGTACAATGTAGGGTAGGAATTAGGGTACAATGTAGGGTAGGGTAGGGTAGGAGTTAGGGTACAATTTAGGGTAGGAGTTAGGGTACAgtgtagggtaggggttagggtacaaTGTAAGGGAGTAGTTAGGGTacagtgtagggtagggtaggagtTAGGATACAATGTAGGTGTTAGGGTAGGGGGGAAAGCAGGTACAAGCACTAGTGGGTaatggtggtgggtgggtggaagGGGGCACTTGGACAATACTGTACAGCACTTCAATATGACCAATTACATTCAGGGGCCACCAGGCAGTATGCATGAGACTGAGGGAGGGGTCAAAATCAGGCCTGCTCAAGAGTTGACAGCAACAGTAGTCTTACAGAGAGAAAATGCATGACCACAGCCTTGAATATCACACATTAAATTAAGGTGCATGCAAACAGATTGGAGGAGTATTAGGGAGTGTTTGTTGACCTGACCCAATATCCTCTCCCAGAAGCCCCACTCATACCCTCTTTACATGTATTATTCCCCccgattacccccccccccccccgtattgTCCCCCTATCAAGACATTTTGTAGATCCAGCTCTCTCACACTTTCCATCTTTACAAATGAAAATTCCTCTTATTCATCCAGACAtaatctctccctttccctcactcTTTGTCAGAAGTCATTCATGAATTAATCTCTCTGTCCTAAAATCTTTGCTGTGTACCCCTTGGGGACCGTTGTACGTTGGTGCACTGTTGCCAGGCAACACTATGAACTGAAAAGTGACCTCAGCTGATAGCCCTTTTGGGGCGACTGGACGTATCTGTAAGGGGCAGGGCATCTTGTGGTTGGGGGTGGGATTTCCCTATATTCCTAGCTTTGAGCAATGGGCCCCAAAAAAGTCCCGTCCCTTACAGACAGTCCCAGGAAGCACCCTGCAGTAGTAGTTATCCCACCTCACCCTTGTCGGGGATGCAGAGATTGACATTCAAATAGAGAATAGGGAGATGTTTTTACTGAGAATAAGGAATGCAAATAGAATGTAGAAAGACATTACTGTGCAAATTGTCAGGGACAACAGCTCCTCCTCATAGGACTTAACTCAATGGGTCGTCCATCACAGCAGCTAGCAGCACACTCCTCTCCATTAACAACGACCAGTATTTCAGCTCAATATCATGAGGGGAAAAAGAGGTCTGTGGGATGTTAGTTCTCTATGTGAGCTATGCATATGGGTATGTAAATACATGAACTGTGACACATTGACAGTGTTTGCATGTGTGCGTAAGTTTGTGCATGTTTTGTGCTTCTGTGCCGATATCATTTCAATCGGTCCCCTTACAGAGCCCAGCCGTCgtaggttagtgtgtgtgtgtgtgtgtgtagatttggTATATCTGACCTGAGAGAAGAACATCTCAGATCTAACAGGTTCTGCCTCGGCTCCTAGGTCTGGTTTGGTTTGGGTCAAGGTGTGATTGTCATTTGGGAGACCACTAAGAACCGATCCTCGGCAGAACTACTTCCATTTTAGGGAGCTGGAAATGACCGTGGTCACACTGCCTATAGGGTGGATGCTCCTACCAATGCAGGTGAGTGGAGTCACGTGGGCTACATGGGTATAGAATCACTCTACATGTATTTATGCTTCTTTATGACAATCAATGGGAAAACGCCATGCATGGAATGTGGAGTGGGAATACTGATCTAGTAGCTGTCACACAGACACATCCTCCACAATGTGATATAAACCCCCTCTGAAATATAAGGCTGTGTGCTGCTTTCTGTCAAATCTTCAACTTCCCAGACAAAGAGCAAGAATAGAGCAACCTAATACATAATGTCAGGTATGTCTTTTCCCCAGTGACCAACCATCCTCACTGACCACCTCACAGAATCTCTCGGCAGGCAAGCGGATGAGTGTGGGAGGGGGAAGATGAGGCTATGGGTCTGAGTGGAGGAGGGCGGGCGCAGGTGGAGGGCTGGGGGTGCAGGAGAAAATTAAGGGGGAGGAGACTGAGCAAAACAGACGACAATTCAAGAAAACCAAAACTTTCTTAAGTTTAAGGGGGGAGAGTAATACATTGGTGTCCTTTTACAGTGAGGGGGAGGCAAAAGTTGTCAAATACTGAGGAACTTTGGGAAAGATAATACTAGGACAAAGAcaaatagagatagatagagagaacaTCCTGCACTAACAATTTCAAAGTAGAAACTCATCTCTCTCCAACCAacgtcattctgtctgtctgtttatctacgtgtgtgtgtttgagggttCAGCAGGACACCTCCATGGTGTGGCTGACCTGGCCCTCGTTGCTGTCAGTGTGTGTAAAACCCCGGATACGAGAGCTCTCAATGGAGCTGCCACTGGTCAGTGAGGCTGTTCGGGAGCGTGCCAGACGGGTCATACTGGCAGAGGGcactaagagagagacagacagagaaaaagagagagggagacagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197389 lncRNA downstream 38646 66145604 ~ 66149000 (-) True G173577
TU197374 lncRNA downstream 45843 66141603 ~ 66141803 (-) True G173569
TU197289 lncRNA downstream 157946 65999375 ~ 66029700 (-) True G173488
TU197247 lncRNA downstream 215589 65951222 ~ 65972057 (-) True G173448
TU197234 lncRNA downstream 256882 65930557 ~ 65930764 (-) True G173436
TU197430 lncRNA upstream 24973 66215739 ~ 66219163 (-) True si:dkeyp-50b9.1
TU197446 lncRNA upstream 64040 66254806 ~ 66256919 (-) False G173619
TU197448 lncRNA upstream 64040 66254806 ~ 66256962 (-) True G173619
TU197469 lncRNA upstream 67921 66258687 ~ 66258901 (-) True G173636
TU197457 lncRNA upstream 100786 66291552 ~ 66298314 (-) False LOC110494122
XR_002469227.2 mRNA downstream 41377 66144846 ~ 66146269 (-) True LOC110494064
XM_021568721.2 mRNA downstream 68933 66084226 ~ 66118713 (-) True znrf1
XM_021568680.2 mRNA downstream 117664 66032023 ~ 66069982 (-) True snrkb
XM_021568612.2 mRNA downstream 357906 65821657 ~ 65829740 (-) True usb1
XM_021568604.2 mRNA downstream 357917 65821657 ~ 65829729 (-) False usb1
XM_021568786.2 mRNA upstream 19670 66210436 ~ 66223350 (-) False si:dkeyp-50b9.1
XM_021568881.2 mRNA upstream 107422 66298188 ~ 66299637 (-) False LOC110494122
XM_021569030.2 mRNA upstream 152864 66343630 ~ 66354538 (-) True LOC110494195
XR_002469252.2 mRNA upstream 391354 66582120 ~ 66586583 (-) False LOC110494316
XR_002469253.2 mRNA upstream 391354 66582120 ~ 66586583 (-) False LOC110494316
TU197229 other downstream 265417 65921850 ~ 65922229 (-) True G173431
TU197163 other downstream 348572 65833341 ~ 65839074 (-) False G173370
TU197164 other downstream 348572 65833341 ~ 65839074 (-) True G173370
TU196939 other downstream 650865 65534471 ~ 65536781 (-) False zcchc14
TU197458 other upstream 87055 66277821 ~ 66298314 (-) False LOC110494122
TU197514 other upstream 144646 66335412 ~ 66338386 (-) True G173675
TU197536 other upstream 184460 66375226 ~ 66390766 (-) True G173696
TU198454 other upstream 501642 66692408 ~ 66692850 (-) True G174505
TU201626 other upstream 3400369 69591135 ~ 69591722 (-) True G177487

Expression Profile