RNA id: TU197514


Basic Information

Item Value
RNA id TU197514
length 2828
RNA type TUCP
GC content 0.48
exon number 4
gene id G173675
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66335412 ~ 66338386 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTTTGTATTCCACAAGAATAATGTTTTTACACCAATCCCTAAAAAAATGGATTATGACAGCATTGCCTCAACCGGGGCAGACATGTTTTCCCTAGAAATGTCACCTGACGTCATCCCCCAAGTCATACACTGGTGTCAAAATTTggcgctttcaagacaactggaaactcggacaAAAATGAGatcaaatcatgacatcagtgatcttcaggtcggagctcaaGAAAGATACCCAAGtctgacttggaattccgagtcgGGTGACTGTTCAAAAAGATTTTTCCCCAATCGGAGCCCGCTTTTCccggagttcccagttgtcttgaatgcggcattAACCCCTTGTAATCTGAGTGTGAACacatactgacattttcaacttgctAACTGGTTATAGTCAGTACTTGATTTTGGATGAAAGAAGTGCAGGAGCTGTCCTTTTCCAAGTGAGTCTATTAAAGACTATATTTACAGAAATTCTAAAATGACATTATGCTATAGAGACCTCTAGTTATTCACTGTTAAGGGGTTCATAAACATTTTCAATGACTTCCCCATGACTTTCAACCATTATTATACCCTACATGAAATAGTAAGTATTATTGACACTGGAAGGCTGCagtgtctgatcccatgtaggcctaccatctcctgccattgtgcccttgatcaaggcacttaGCCCTGAAACACCCAAGTCTGCTTATCAAGGTCCTGTTGAgcagctgatgtttaggctacaatGTGGTTAGATCAGGGCTTGAACAACTGCATGCACACCCAGTAGctatcctggaggatggttgccACACTTGATATAAAATAGTGCAACaatacaaccaaatacttttgtCTTTATAAAATTATTCCCTAACTCAATGAAACAGGTGGATAAGGTGGGCTACTTCAGAGCAAGGTCTCCCACTAGACATGTTTATTCATATAAGCCTCAAATATTCATGTTTCAGGGGAGATCTATGCACAGCAAGTTATTTGTCAATTATGCTATTCTTAGAATATGTTTTAACGTTGTCGCAATTACATGGCTACTGTTTAATATCGGGGAATCCCATCTTTTCAACGTTGCAGATGTACAGTATTTAGGccatctacagtacagtgccGGTGGAAAGGCAACAATGATATTAATGCTTAGCTGTAGTTAACGATCGAGATAACTGCTCCAAGGAAAtgccaaaataaataaaaaacaccaacatagtgtcttaattTCAGTTGTATGCATTCAGTTGTATAACTgtctaggtacccccctttcctttctctttaatagggtgttgggctaccagaacagcttcaatgcatcttggcatagattctacaagtgtctggaactctattggagggatgcgacgcCATTCTTCCATGAAAAATTCCACAATTGGGTGTTTTGTCGAAGGTGGTGGGAAACGCTGTCTCCTATGTACCTTTGGGACCCCTTTTTCAAAGTCAATTCATtgagatctcttctagccatggtaggcAACAATGCACAACTTGGCATTTTTATAAATTACCTTAAGCATGATGGGAGGTTCATTTCTTAATTAACTCAGAAACAACAACTGTATGGAAGAACCTGCTTTCAATAGACTTTGTATCCCCcatttaattaattatttattttgttaCCTGTATTTCTTTCTGGCAGTGATCAAACACTTAAAGTTATCAGATTCATCAACATATTATTCCAATAAAGAAGTCATGAATTTCACACATTTTAAATTGTATTACTGTTCATTTCAAGTTTATATAACCGCAAGCTTGTGTGTGTGATTAGTGAATTTAAAAGGTGCAAATTGGTAGTCAGGCACAGATGGCAGTAGGCAGACAGAATGGCATGCTAGGAATAGGCACCAGGGTGTCAGAGAAGatggatgccaagagtgtgcaaaactgtcatcaaggcaaagggttgctatttgaagaatctcaaattttctggttactacatgattccatgtgttatttcatagtttgtcttcactattattctacaatgtataaaatagtaaaaataaagaaaaatccttgaattagttggtgtccaaacttttgactgctagtGTACAGTGTGTTTGTATTTATGTGAAAATTGAAACTGTACATAAAATGGTGCAGTGAATTAAAACGAAGGAGGGTGTGGTTTGAGGTGTATGTTGGGTATGGTGTGGACCGGCTGTGAGTTGGGTGTGTAGTCTGTGGGatagagaagagagcagagctgGGCAGAGTTTCCCACTAGATTGTGTATAACTGGCTGTGGCTAAACTCAAGTGTATCCTCACAACCAGGCCCTGGAAGAGATCCCTCAGATACTGGGCATCCAGTGCCATTCTCTGGGCCAGCTCGCGTCGCTCCTCTGCATTACAACACACCAGCCTCTTCTGCATCAACACCCTCACATACTCCACCACCATCAGCCACTGCATGCAAACGCTACTCAGGACACTGGTATAAGTCAGCTACAGACTAATATGATTGTCAAAAGGTGCTGGCAGGGTGGGCGAACACAACTACACATCTCAATATGGCGCTCCAGGACGCCACATAACTTCGAAGTGAGCGTGATGTATCCCTGGGCCAGTCAGGAGCGAGACAGGAGTCCCTGCAGGAAGGGCTGGAGCTCCAGCAGTAGTTGACCTATCGCCAGACGGCAGGCCATCCTCACAACCCGGAACAGAGCAGCCAGGGGTTGATAGAGGATGAGGATGATGCAGTCTCTTAGAGGCCAGTAGATAGAGGTGGAACTTGTTATTTGTGCTTTGATCCCAGCGATGCTCCTTCCCAAATTCAACAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197515 lncRNA downstream 468 66333913 ~ 66334944 (-) True G173676
TU197484 lncRNA downstream 34691 66300503 ~ 66300721 (-) True G173651
TU197457 lncRNA downstream 37098 66291552 ~ 66298314 (-) False LOC110494122
TU197456 lncRNA downstream 37098 66296020 ~ 66298314 (-) True LOC110494122
TU197469 lncRNA downstream 76511 66258687 ~ 66258901 (-) True G173636
TU197518 lncRNA upstream 3711 66342097 ~ 66342307 (-) True G173679
TU197519 lncRNA upstream 20538 66358924 ~ 66359445 (-) True G173680
TU197530 lncRNA upstream 34753 66373139 ~ 66373747 (-) True G173690
TU197535 lncRNA upstream 76890 66415276 ~ 66416390 (-) True G173695
TU197533 lncRNA upstream 83255 66421641 ~ 66422324 (-) True G173693
XM_021568881.2 mRNA downstream 35775 66298188 ~ 66299637 (-) False LOC110494122
XM_021568786.2 mRNA downstream 112062 66210436 ~ 66223350 (-) False si:dkeyp-50b9.1
XR_002469227.2 mRNA downstream 189143 66144846 ~ 66146269 (-) True LOC110494064
XM_021568721.2 mRNA downstream 216699 66084226 ~ 66118713 (-) True znrf1
XM_021568680.2 mRNA downstream 265430 66032023 ~ 66069982 (-) True snrkb
XM_021569030.2 mRNA upstream 5244 66343630 ~ 66354538 (-) True LOC110494195
XR_002469252.2 mRNA upstream 243734 66582120 ~ 66586583 (-) False LOC110494316
XR_002469253.2 mRNA upstream 243734 66582120 ~ 66586583 (-) False LOC110494316
XR_002469254.2 mRNA upstream 243734 66582120 ~ 66586583 (-) False LOC110494316
XR_002469258.2 mRNA upstream 243734 66582120 ~ 66586583 (-) False LOC110494316
TU197458 other downstream 37098 66277821 ~ 66298314 (-) False LOC110494122
TU197229 other downstream 413183 65921850 ~ 65922229 (-) True G173431
TU197163 other downstream 496338 65833341 ~ 65839074 (-) False G173370
TU197164 other downstream 496338 65833341 ~ 65839074 (-) True G173370
TU196939 other downstream 798631 65534471 ~ 65536781 (-) False zcchc14
TU197536 other upstream 36840 66375226 ~ 66390766 (-) True G173696
TU198454 other upstream 354022 66692408 ~ 66692850 (-) True G174505
TU201626 other upstream 3252749 69591135 ~ 69591722 (-) True G177487
TU201996 other upstream 3355223 69693609 ~ 69704399 (-) True LOC110494902
TU202994 other upstream 4222136 70560522 ~ 70560855 (-) True LOC110501848

Expression Profile