RNA id: TU197565


Basic Information

Item Value
RNA id TU197565
length 283
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G173725
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66426908 ~ 66427190 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggatggggagtggGGAGTCACTAGAGAGTCACAAACTTTTGGAAATCATTGTGTTTGATCATATTTTACagaaaacaaatgaacaacagactttcagcgtGCTTATAGGGAACGGCACTAAACATGCTCGGCACTgtcacaaatgactgatgattggctgaaagaaattgatagcagattgtgggagctgttttgttagacttcagtgcagcttttgatgtCATTGATCATAACCTATTGCTGAAAAAACTCTGGTGTTATGGATTTGCATCCTTTGCCTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197533 lncRNA downstream 4584 66421641 ~ 66422324 (-) True G173693
TU197535 lncRNA downstream 10518 66415276 ~ 66416390 (-) True G173695
TU197530 lncRNA downstream 53161 66373139 ~ 66373747 (-) True G173690
TU197519 lncRNA downstream 67463 66358924 ~ 66359445 (-) True G173680
TU197518 lncRNA downstream 84601 66342097 ~ 66342307 (-) True G173679
TU197662 lncRNA upstream 68928 66496118 ~ 66496490 (-) True G173810
TU197697 lncRNA upstream 102619 66529809 ~ 66530010 (-) True G173832
TU198338 lncRNA upstream 110712 66537902 ~ 66545441 (-) True G174428
TU198346 lncRNA upstream 118930 66546120 ~ 66547318 (-) True G174434
TU198349 lncRNA upstream 124704 66551894 ~ 66552356 (-) True G174435
XM_021569030.2 mRNA downstream 72370 66343630 ~ 66354538 (-) True LOC110494195
XM_021568881.2 mRNA downstream 127271 66298188 ~ 66299637 (-) False LOC110494122
XM_021568786.2 mRNA downstream 203558 66210436 ~ 66223350 (-) False si:dkeyp-50b9.1
XR_002469227.2 mRNA downstream 280639 66144846 ~ 66146269 (-) True LOC110494064
XM_021568721.2 mRNA downstream 308195 66084226 ~ 66118713 (-) True znrf1
XR_002469252.2 mRNA upstream 154930 66582120 ~ 66586583 (-) False LOC110494316
XR_002469253.2 mRNA upstream 154930 66582120 ~ 66586583 (-) False LOC110494316
XR_002469254.2 mRNA upstream 154930 66582120 ~ 66586583 (-) False LOC110494316
XR_002469258.2 mRNA upstream 154930 66582120 ~ 66586583 (-) False LOC110494316
XR_002469259.2 mRNA upstream 154930 66582120 ~ 66586583 (-) False LOC110494316
TU197536 other downstream 36142 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 88522 66335412 ~ 66338386 (-) True G173675
TU197458 other downstream 128594 66277821 ~ 66298314 (-) False LOC110494122
TU197229 other downstream 504679 65921850 ~ 65922229 (-) True G173431
TU197164 other downstream 587834 65833341 ~ 65839074 (-) True G173370
TU198454 other upstream 265218 66692408 ~ 66692850 (-) True G174505
TU201626 other upstream 3163945 69591135 ~ 69591722 (-) True G177487
TU201996 other upstream 3266419 69693609 ~ 69704399 (-) True LOC110494902
TU202994 other upstream 4133332 70560522 ~ 70560855 (-) True LOC110501848
TU203498 other upstream 4341968 70769158 ~ 70772536 (-) True fam169b

Expression Profile