Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028429 |
| length | 1474 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 2 |
| gene id | XLOC_014308 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 43978814 ~ 43980876 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0030178 | negative regulation of Wnt signaling pathway | biological_process |
| GO:0070121 | Kupffer's vesicle development | biological_process |
| GO:0016055 | Wnt signaling pathway | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-060503-63 | Predicted to enable metal ion binding activity. Acts upstream of or within Kupffer's vesicle development. Predicted to be located in cytoplasm and plasma membrane. Is expressed in blastoderm; blastodisc; somite; and tail bud. |
| ensembl_id | ENSDART00000102314 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00030043 | lncRNA | upstream | 174404 | 43800832 ~ 43804410 (+) | False | XLOC_014302 |
| TCONS_00030044 | lncRNA | upstream | 174404 | 43801177 ~ 43804410 (+) | True | XLOC_014302 |
| TCONS_00030041 | lncRNA | upstream | 187238 | 43787003 ~ 43791576 (+) | True | XLOC_014300 |
| TCONS_00030042 | lncRNA | upstream | 188098 | 43787142 ~ 43790716 (+) | True | XLOC_014301 |
| TCONS_00028415 | lncRNA | upstream | 253959 | 43715970 ~ 43724855 (+) | False | XLOC_014297 |
| TCONS_00029734 | lncRNA | downstream | 936223 | 44917099 ~ 44959698 (+) | False | XLOC_014314 |
| TCONS_00029733 | lncRNA | downstream | 936223 | 44917099 ~ 44959698 (+) | False | XLOC_014314 |
| TCONS_00029732 | lncRNA | downstream | 936223 | 44917099 ~ 44959698 (+) | True | XLOC_014314 |
| TCONS_00030045 | lncRNA | downstream | 1378401 | 45359277 ~ 45365727 (+) | True | XLOC_014315 |
| TCONS_00030046 | lncRNA | downstream | 1746338 | 45727214 ~ 45728062 (+) | True | XLOC_014317 |
| TCONS_00028428 | mRNA | upstream | 2292 | 43969363 ~ 43976522 (+) | True | XLOC_014307 |
| TCONS_00028427 | mRNA | upstream | 18061 | 43905671 ~ 43960753 (+) | True | XLOC_014306 |
| TCONS_00028426 | mRNA | upstream | 18366 | 43905671 ~ 43960448 (+) | False | XLOC_014306 |
| TCONS_00028423 | mRNA | upstream | 77347 | 43884120 ~ 43901467 (+) | False | XLOC_014305 |
| TCONS_00028430 | mRNA | downstream | 6513 | 43987389 ~ 43989462 (+) | True | XLOC_014309 |
| TCONS_00028431 | mRNA | downstream | 15060 | 43995936 ~ 43998061 (+) | True | XLOC_014310 |
| TCONS_00028432 | mRNA | downstream | 23472 | 44004348 ~ 44006445 (+) | True | XLOC_014311 |
| TCONS_00028434 | mRNA | downstream | 28597 | 44009473 ~ 44036792 (+) | True | XLOC_014312 |
| TCONS_00028435 | mRNA | downstream | 58973 | 44039849 ~ 44047176 (+) | True | XLOC_014313 |
| TCONS_00028411 | other | upstream | 313303 | 43665391 ~ 43665511 (+) | True | XLOC_014295 |
| TCONS_00028401 | other | upstream | 526867 | 43439401 ~ 43451947 (+) | False | XLOC_014288 |
| TCONS_00028380 | other | upstream | 897754 | 43080925 ~ 43081060 (+) | True | XLOC_014280 |
| TCONS_00028379 | other | upstream | 900935 | 43077744 ~ 43077879 (+) | True | XLOC_014279 |
| TCONS_00028365 | other | upstream | 1063273 | 42915419 ~ 42915541 (+) | True | XLOC_014274 |
| TCONS_00028433 | other | downstream | 28597 | 44009473 ~ 44032164 (+) | False | XLOC_014312 |
| TCONS_00028436 | other | downstream | 1527989 | 45508865 ~ 45508981 (+) | True | XLOC_014316 |
| TCONS_00028450 | other | downstream | 2262744 | 46243620 ~ 46280931 (+) | False | XLOC_014327 |
| TCONS_00028459 | other | downstream | 3318290 | 47299166 ~ 47309383 (+) | False | XLOC_014336 |
| TCONS_00028462 | other | downstream | 3325747 | 47306623 ~ 47306738 (+) | True | XLOC_014337 |
