RNA id: TU197760


Basic Information

Item Value
RNA id TU197760
length 207
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G173889
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66645419 ~ 66645625 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGGTGCCTAGGGCGATGCGCCTAGGGCAATGCGCCTAGGGGAGGGATCTCCTCTGGGCCCCGAAGGACAGGACGGTTATTGATTCGGAAGAGCAGGAGGAGGCAAGTTGATAAGGACTCACCCCGTTCCTGTACAAAGGACCAAAGACAGCTTTTTAACAAAGTGACTTTTTTaacatgttttcatgtctttaaaaaatatatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197759 lncRNA upstream 885 66644299 ~ 66644534 (+) True G173888
TU197739 lncRNA upstream 22839 66622344 ~ 66622580 (+) True G173870
TU197738 lncRNA upstream 23416 66621592 ~ 66622003 (+) True G173869
TU197737 lncRNA upstream 24144 66621040 ~ 66621275 (+) True G173868
TU197706 lncRNA upstream 27737 66615365 ~ 66617682 (+) True G173840
TU197761 lncRNA downstream 178 66645803 ~ 66646013 (+) True G173890
TU197764 lncRNA downstream 4177 66649802 ~ 66650216 (+) True G173893
TU197756 lncRNA downstream 32389 66678014 ~ 66678467 (+) True G173885
TU197773 lncRNA downstream 45381 66691006 ~ 66691283 (+) True G173902
TU197795 lncRNA downstream 87626 66733251 ~ 66735127 (+) True G173923
XM_021569256.2 mRNA upstream 33829 66586399 ~ 66611590 (+) False vps9d1
XM_021569265.2 mRNA upstream 33829 66586399 ~ 66611590 (+) False vps9d1
XM_036953756.1 mRNA upstream 33829 66586642 ~ 66611590 (+) True vps9d1
XM_021569243.2 mRNA upstream 63768 66555547 ~ 66581651 (+) True LOC110494295
XM_021569233.2 mRNA upstream 93062 66549545 ~ 66552357 (+) True LOC110494286
XM_036953800.1 mRNA downstream 11219 66656844 ~ 66665448 (+) False LOC110494358
XM_036953806.1 mRNA downstream 11303 66656928 ~ 66665610 (+) True LOC110494358
XM_036953816.1 mRNA downstream 32129 66677754 ~ 66688505 (+) False LOC110494385
XM_021569393.2 mRNA downstream 33510 66679135 ~ 66688505 (+) True LOC110494385
XM_021569405.2 mRNA downstream 59677 66705302 ~ 66711432 (+) False meak7
TU196564 other upstream 379396 66262626 ~ 66266023 (+) True LOC110494096
TU196344 other upstream 709286 65935596 ~ 65936133 (+) True G172639
TU196056 other upstream 1004443 65593517 ~ 65640976 (+) False jph3
TU196057 other upstream 1004443 65593517 ~ 65640976 (+) True jph3
TU196081 other upstream 1108632 65531146 ~ 65536787 (+) True map1lc3b
TU197812 other downstream 96195 66741820 ~ 66742213 (+) True G173938
TU197931 other downstream 309899 66955524 ~ 66972455 (+) False LOC110494451
TU198150 other downstream 593265 67238890 ~ 67239896 (+) True LOC110494472
TU198304 other downstream 840538 67486163 ~ 67488201 (+) True hsbp1b
TU200669 other downstream 2215213 68860838 ~ 68861368 (+) True G176612

Expression Profile