RNA id: TU198422


Basic Information

Item Value
RNA id TU198422
length 1664
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G174475
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66652531 ~ 66654391 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTTACAGAAggcttacagtaccagtcaaaagtttggattcttcaatgtagccacccattgccttgatgacagctttgcacactcttggcattctctcaaccagcttcatgaggaatgaggaggtcccacatatgctgagcacttgttggctgcttttccttcactctgcggtccaacatatcccaaaccatctcaattgagttgaggtcgggtgattgtggaggccaggtcatctgacgcagcactccatcactatccttcttggtcaaatagcccttacacagcctggaggtgttttgggtcattgtcctgttgaaaaacaaatgacagtcctactaagcgcaaaccagatgggatggcgtattgctgcagaatgctgtagtagccatgttggttaaatgtgccttgaattctgaataaatcactgacagtgtcaccagaaaagcacccccacaccatcacactccctcctacatgcttcacggtgggaaccacacatgcgtaaatcatccattcacctactctgcgtctcacaaagacaccgggtttggaaccaaaaattgcaaatttggactcatcagaccaaaggacagatttccaccggtctaatgtctatttgtaaataaagagatcttctgttgaatctgacaattaatcttgatggttgtacagtcgtctcaaataaaactgtgaaggacctcggcgttactctggaccctgatctctcttttgacaaacatatcaagactgttttaaggacccctcctgtctcagcctccactatttatgctgcagtagtttatgtgtcggggggctagggtcagtctgttatatctggagtatttctcccatcttatccggtgtcctgtgtgaatttaagtatgctctctctaattctctctttttctctcttcctttctcaaattctctttctttctctctctcggaggacctgagccctaggaccatgcctcaggactacctggcatgatgactccttgctgtccccagtccacctggccgtgctgctgctccagtttcaactgttctgcctgcggctatggaaccctgacctgttcaccggacgtgctacctgtcccagacctgctgttttcaactctctagagacagcaggagcggtagagatactctgaatgatcggctatgaaaagccaactgacatttactcctgaggtgctgacctgttgcaccctcgacaaccacagtgattattattatttgaccctgctggccatctatgaacatttgaacatctttgccatgttctgttataatctccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttcctaggttcttgcctttctagggagtttttcctagccaccgtgcttctacacctacattgcttgctgtttggtgtttttaggctgggtttctgtacagcactttgtgacataagctgatataagaagggctttataaatacatttgattgattgatatttctcatgtttcttggcccaagcaagtctcttcttattattggtgtcctttagtagtagtttccttgcagcaatttgaccatgatggttttgcaactgcacttgaagaaatgttcaaagttctttaaaatgttctgtattga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198372 lncRNA downstream 30527 66621575 ~ 66622004 (-) True G174447
TU198354 lncRNA downstream 98619 66553555 ~ 66553912 (-) True G174437
TU198353 lncRNA downstream 99145 66553058 ~ 66553386 (-) True G174436
TU198349 lncRNA downstream 100175 66551894 ~ 66552356 (-) True G174435
TU198346 lncRNA downstream 105213 66546120 ~ 66547318 (-) True G174434
TU198457 lncRNA upstream 40902 66695293 ~ 66695679 (-) True G174508
TU198410 lncRNA upstream 78846 66733237 ~ 66735127 (-) True G174470
TU198534 lncRNA upstream 197110 66851501 ~ 66851815 (-) True G174580
TU198538 lncRNA upstream 209310 66863701 ~ 66863937 (-) True G174584
TU198540 lncRNA upstream 214365 66868756 ~ 66869181 (-) True G174586
XM_036953795.1 mRNA downstream 8942 66641062 ~ 66643589 (-) True LOC110494342
XM_021569328.2 mRNA downstream 9135 66641062 ~ 66643396 (-) False LOC110494342
XM_021569312.2 mRNA downstream 9150 66641062 ~ 66643381 (-) False LOC110494342
XR_002475052.2 mRNA downstream 14329 66637153 ~ 66638202 (-) True LOC110533844
XM_021569301.2 mRNA downstream 18713 66629559 ~ 66633818 (-) True LOC110494333
XM_021569380.2 mRNA upstream 13483 66667874 ~ 66678578 (-) False LOC110494363
XM_021569363.2 mRNA upstream 13483 66667874 ~ 66678769 (-) False LOC110494363
XM_021569372.2 mRNA upstream 13483 66667874 ~ 66678769 (-) True LOC110494363
XM_036953831.1 mRNA upstream 80790 66735181 ~ 66774321 (-) True LOC110494415
XM_021569441.2 mRNA upstream 120843 66775234 ~ 66790011 (-) False LOC110494421
TU197536 other downstream 261765 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 314145 66335412 ~ 66338386 (-) True G173675
TU197458 other downstream 354217 66277821 ~ 66298314 (-) False LOC110494122
TU197229 other downstream 730302 65921850 ~ 65922229 (-) True G173431
TU197164 other downstream 813457 65833341 ~ 65839074 (-) True G173370
TU198454 other upstream 38017 66692408 ~ 66692850 (-) True G174505
TU201626 other upstream 2936744 69591135 ~ 69591722 (-) True G177487
TU201996 other upstream 3039218 69693609 ~ 69704399 (-) True LOC110494902
TU202994 other upstream 3906131 70560522 ~ 70560855 (-) True LOC110501848
TU203498 other upstream 4114767 70769158 ~ 70772536 (-) True fam169b

Expression Profile