RNA id: TCONS_00028433


Basic Information

Item Value
RNA id TCONS_00028433
length 939
RNA type processed_transcript
GC content 0.44
exon number 8
gene id XLOC_014312
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 44009473 ~ 44036792 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAGCAGGAGTTGATATTGTCAAACTTCACTGTACATTTGTAGTGTAATATGGACAGATTTACTTGGAAACATGCATATCCAGCTGCATGGTACCGAAGATGTTACTTTTATTCCTGAAATACTCGCTTTCTTAGTTTATCCCATATGAAGAATCGACATGGGAAAGCTGCAATCCAAACATGCATATAAACGGAGAGAAAACCCTGAAGGAGATGCTTTTAAGGAGGTTGCCTGTAGTGAGGAATTGGACAGAAACAAGCAgGATCTGTGTGTTAGAGAAGCAGAAGAGGATCATCTGTCAGATCATTACTGTTCCCTGCAGGTAACTCTTCCACCACAGAGATTATTGGAGACTTCTGAATCTTTGCATTCTTGTCCTGAAAATGGGCGACAGCATCCGCAGAAAGACACAGTGAGGAGAAGTGGGAAGACTGATGAAAAGGAGTGTAATGTGTCCATCCCGGATGAAAATCGTCAAGAGTGGATGATTACACTGTATGGTTTGGACAACAGTGGGAAAATAACCAAAGAGAATAAATTGAGCTTGATGCAGACGATCTGTGAGCTGGTTGAAGCTTCAGTCAAACAGCTGGTGCTCAGCAATGGCACAACCCTGCGTGTGAAGCTGAGCGTCACTCCACTGACCAGCAGAAAAACATACAGGAAAGaggggggaaGCCGtacccattagtgaccatctctctctCATCAGCATAGAcaaccctgagtgagaagcagccgtccgccATTTAGAGTTTTCACCTGCTCAAGATAATGTCAGAggcattataaatgtggagtttagGATGCGCTAATACAGACGACCTTCTTCTGAGACACtttttctttaacattttcagattttcacaGAGAGAACGTTactcctgttttgaatctgccactatgctgacacacaggcatttgtaactccgccctct

Function

GO:

id name namespace
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-63 Predicted to enable metal ion binding activity. Acts upstream of or within Kupffer's vesicle development. Predicted to be located in cytoplasm and plasma membrane. Is expressed in blastoderm; blastodisc; somite; and tail bud.

Ensembl:

ensembl_id ENSDART00000136147

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030043 lncRNA upstream 205063 43800832 ~ 43804410 (+) False XLOC_014302
TCONS_00030044 lncRNA upstream 205063 43801177 ~ 43804410 (+) True XLOC_014302
TCONS_00030041 lncRNA upstream 217897 43787003 ~ 43791576 (+) True XLOC_014300
TCONS_00030042 lncRNA upstream 218757 43787142 ~ 43790716 (+) True XLOC_014301
TCONS_00028415 lncRNA upstream 284618 43715970 ~ 43724855 (+) False XLOC_014297
TCONS_00029734 lncRNA downstream 884935 44917099 ~ 44959698 (+) False XLOC_014314
TCONS_00029733 lncRNA downstream 884935 44917099 ~ 44959698 (+) False XLOC_014314
TCONS_00029732 lncRNA downstream 884935 44917099 ~ 44959698 (+) True XLOC_014314
TCONS_00030045 lncRNA downstream 1327113 45359277 ~ 45365727 (+) True XLOC_014315
TCONS_00030046 lncRNA downstream 1695050 45727214 ~ 45728062 (+) True XLOC_014317
TCONS_00028432 mRNA upstream 3028 44004348 ~ 44006445 (+) True XLOC_014311
TCONS_00028431 mRNA upstream 11412 43995936 ~ 43998061 (+) True XLOC_014310
TCONS_00028430 mRNA upstream 20011 43987389 ~ 43989462 (+) True XLOC_014309
TCONS_00028429 mRNA upstream 28597 43978814 ~ 43980876 (+) True XLOC_014308
TCONS_00028428 mRNA upstream 32951 43969363 ~ 43976522 (+) True XLOC_014307
TCONS_00028435 mRNA downstream 7685 44039849 ~ 44047176 (+) True XLOC_014313
TCONS_00028437 mRNA downstream 1812199 45844363 ~ 45963264 (+) True XLOC_014318
TCONS_00028438 mRNA downstream 1929852 45962016 ~ 45967718 (+) True XLOC_014319
TCONS_00028439 mRNA downstream 1938528 45970692 ~ 45980732 (+) True XLOC_014320
TCONS_00028440 mRNA downstream 2063046 46095210 ~ 46100763 (+) True XLOC_014322
TCONS_00028411 other upstream 343962 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028401 other upstream 557526 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028380 other upstream 928413 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028379 other upstream 931594 43077744 ~ 43077879 (+) True XLOC_014279
TCONS_00028365 other upstream 1093932 42915419 ~ 42915541 (+) True XLOC_014274
TCONS_00028436 other downstream 1476701 45508865 ~ 45508981 (+) True XLOC_014316
TCONS_00028450 other downstream 2211456 46243620 ~ 46280931 (+) False XLOC_014327
TCONS_00028459 other downstream 3267002 47299166 ~ 47309383 (+) False XLOC_014336
TCONS_00028462 other downstream 3274459 47306623 ~ 47306738 (+) True XLOC_014337
TCONS_00028470 other downstream 3542451 47574615 ~ 47574823 (+) True XLOC_014344

Expression Profile

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