RNA id: TU198048


Basic Information

Item Value
RNA id TU198048
length 364
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G174151
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 67082972 ~ 67083335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAAAgcacacatttgtttattttGCAGTTATGTTAGAGAATGTTATAATTAGCCATAACAAAGAGAATGATGTTCTACTTTTCAAATTCATGATCAACATTAATTATGTTTTAACAATTTTTGGGCAAAATGACAAAAGTATTCTCAATTTATCTTAATGATGTAGGGAGAATGCATACGTGCTTTtctttaaagctagaatccttagtggCTACATACATTTTTGACTTCTTGAAGAATAgaatttataaatgcctcatgaacttagttcaactgtcgtaccccatcagaacaaAGTATAcccttgttttactccaatgtttgtaaataaTGTAAATGTAAGCAAACACTGTATTGATATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198047 lncRNA upstream 7 67082535 ~ 67082965 (+) True G174150
TU197928 lncRNA upstream 87461 66993617 ~ 66995511 (+) True LOC110494451
TU197978 lncRNA upstream 103923 66972995 ~ 66979049 (+) True G174083
TU197945 lncRNA upstream 162989 66919751 ~ 66919983 (+) True G174051
TU197943 lncRNA upstream 163970 66918779 ~ 66919002 (+) True G174049
TU198052 lncRNA downstream 4458 67087793 ~ 67088059 (+) True G174155
TU198125 lncRNA downstream 119537 67202872 ~ 67214318 (+) True tango6
TU198145 lncRNA downstream 131318 67214653 ~ 67214887 (+) True G174244
TU198155 lncRNA downstream 144517 67227852 ~ 67228503 (+) False has3
TU198153 lncRNA downstream 145419 67228754 ~ 67229385 (+) False has3
XM_021569506.2 mRNA upstream 87451 66900017 ~ 66995521 (+) False LOC110494451
XM_021569469.2 mRNA upstream 254337 66825247 ~ 66828635 (+) True foxl1
LOC110501804 mRNA upstream 350996 66717186 ~ 66731976 (+) True LOC110501804
XM_021569411.2 mRNA upstream 371540 66705344 ~ 66711432 (+) False meak7
XM_036953894.1 mRNA downstream 52607 67135942 ~ 67175718 (+) False LOC110494462
XM_036953899.1 mRNA downstream 52607 67135942 ~ 67176343 (+) False LOC110494462
XM_036953889.1 mRNA downstream 52607 67135942 ~ 67176522 (+) True LOC110494462
XM_036933501.1 mRNA downstream 94326 67177661 ~ 67180406 (+) False il17c2
NM_001185030.1 mRNA downstream 95720 67179055 ~ 67180759 (+) True il17c2
TU197931 other upstream 110517 66955524 ~ 66972455 (+) False LOC110494451
TU197812 other upstream 340759 66741820 ~ 66742213 (+) True G173938
TU196564 other upstream 816949 66262626 ~ 66266023 (+) True LOC110494096
TU196344 other upstream 1146839 65935596 ~ 65936133 (+) True G172639
TU196057 other upstream 1441996 65593517 ~ 65640976 (+) True jph3
TU198150 other downstream 155555 67238890 ~ 67239896 (+) True LOC110494472
TU198304 other downstream 402828 67486163 ~ 67488201 (+) True hsbp1b
TU200669 other downstream 1777503 68860838 ~ 68861368 (+) True G176612
TU200792 other downstream 1872928 68956263 ~ 68957886 (+) True G176725
TU201174 other downstream 2373223 69456558 ~ 69457433 (+) True G177067

Expression Profile