RNA id: TU199042


Basic Information

Item Value
RNA id TU199042
length 233
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G175062
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 67558963 ~ 67559195 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccctagagcacacaaaaagtatacatacctcggcctatcAGCGCCACagataacttccacaaagctgtgaatgatttgagagacaaggcaagaagggccttctatgccatcaaaaataacataaaatttgacataccaattaggatctggcaaaaaaatacttgaatccgtTATAGaaaccattgccctttatggttgtgaggtctggggtctgctcaccaaccaaggattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198286 lncRNA upstream 97278 67458556 ~ 67461685 (+) True G174377
TU198235 lncRNA upstream 156343 67368154 ~ 67402620 (+) True G174327
TU198227 lncRNA upstream 204454 67354078 ~ 67354509 (+) True G174319
TU198178 lncRNA upstream 295508 67263175 ~ 67263455 (+) True G174273
TU198173 lncRNA upstream 301748 67256953 ~ 67257215 (+) True G174268
TU199051 lncRNA downstream 4860 67564055 ~ 67564635 (+) True G175071
TU199058 lncRNA downstream 14534 67573729 ~ 67573939 (+) True G175078
TU199083 lncRNA downstream 28365 67587560 ~ 67587920 (+) True G175103
TU199088 lncRNA downstream 34009 67593204 ~ 67593426 (+) True G175108
TU199089 lncRNA downstream 34328 67593523 ~ 67593778 (+) True G175109
XM_021569726.2 mRNA upstream 21988 67524410 ~ 67536975 (+) True LOC110494554
XM_021569688.2 mRNA upstream 70758 67486128 ~ 67488205 (+) False hsbp1b
XM_021569567.2 mRNA upstream 319061 67232278 ~ 67239902 (+) False LOC110494472
XM_036953918.1 mRNA upstream 328745 67216792 ~ 67230218 (+) False has3
XM_036953931.1 mRNA upstream 328745 67216792 ~ 67230218 (+) False has3
XM_036954070.1 mRNA downstream 844464 68403659 ~ 68551466 (+) False LOC110501822
XM_036954080.1 mRNA downstream 844464 68403659 ~ 68551466 (+) False LOC110501822
XM_036954086.1 mRNA downstream 844466 68403661 ~ 68551466 (+) True LOC110501822
XM_021569763.2 mRNA downstream 994559 68553754 ~ 68592859 (+) True si:ch211-212o1.2
XM_021569775.2 mRNA downstream 1086280 68645475 ~ 68653500 (+) True cbln1
TU198304 other upstream 70762 67486163 ~ 67488201 (+) True hsbp1b
TU198150 other upstream 319067 67238890 ~ 67239896 (+) True LOC110494472
TU197931 other upstream 586508 66955524 ~ 66972455 (+) False LOC110494451
TU197812 other upstream 816750 66741820 ~ 66742213 (+) True G173938
TU196564 other upstream 1292940 66262626 ~ 66266023 (+) True LOC110494096
TU200669 other downstream 1301643 68860838 ~ 68861368 (+) True G176612
TU200792 other downstream 1397068 68956263 ~ 68957886 (+) True G176725
TU201174 other downstream 1897363 69456558 ~ 69457433 (+) True G177067
TU201991 other downstream 2548091 70107286 ~ 70113440 (+) False G177812
TU203144 other downstream 3236215 70795410 ~ 70807904 (+) True igf1ra

Expression Profile