RNA id: TU199044


Basic Information

Item Value
RNA id TU199044
length 241
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G175064
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 67560152 ~ 67560392 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagatgaagagaacaGGATTTCTAGCGGTTctattcatctacctcttcaTTGTGACCATACTGTTGTTTTACATCCTCCTCTGATACAATTTCATCTTCCCTCTCACTCCCCTGCACTCATCCTACCATCCTTTACTGTTTTTTTCTatgaatgctctctctctctcaattcaatttcaatttaagggctttattgacatggtaAACATATGtgaatattgccaaagcaagtgaactagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198977 lncRNA downstream 70315 67488479 ~ 67489837 (-) True G175004
TU198949 lncRNA downstream 137159 67422266 ~ 67422993 (-) True G174977
TU198905 lncRNA downstream 192552 67367370 ~ 67367600 (-) True G174937
TU198902 lncRNA downstream 194664 67365288 ~ 67365488 (-) True G174934
TU198901 lncRNA downstream 194896 67364920 ~ 67365256 (-) True G174933
TU199072 lncRNA upstream 19888 67580280 ~ 67580484 (-) True G175092
TU199095 lncRNA upstream 37947 67598339 ~ 67598548 (-) True G175115
TU199546 lncRNA upstream 58435 67618827 ~ 67619342 (-) True G175549
TU199549 lncRNA upstream 61482 67621874 ~ 67622252 (-) True G175552
TU199565 lncRNA upstream 83503 67643895 ~ 67644102 (-) True G175568
XM_021569702.2 mRNA downstream 36361 67491429 ~ 67523791 (-) True zgc:173742
XM_021569669.2 mRNA downstream 74126 67403141 ~ 67486026 (-) True si:dkey-246g23.2
XM_021569676.2 mRNA downstream 74386 67403141 ~ 67485766 (-) False si:dkey-246g23.2
XM_021579654.2 mRNA downstream 205430 67349284 ~ 67354722 (-) True LOC110501813
XM_021569642.2 mRNA downstream 256013 67302200 ~ 67304139 (-) True LOC110494509
XM_036954048.1 mRNA upstream 105794 67666186 ~ 68192893 (-) False cdh13
XM_036954055.1 mRNA upstream 105794 67666186 ~ 68192893 (-) True cdh13
XM_021569803.2 mRNA upstream 1390945 68951337 ~ 68977698 (-) False lonp2
XM_021569811.2 mRNA upstream 1390945 68951337 ~ 68977698 (-) True lonp2
XM_021617980.2 mRNA upstream 1420018 68980410 ~ 69003899 (-) False il34
TU198454 other downstream 867302 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 1169386 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 1221766 66335412 ~ 66338386 (-) True G173675
TU197458 other downstream 1261838 66277821 ~ 66298314 (-) False LOC110494122
TU197229 other downstream 1637923 65921850 ~ 65922229 (-) True G173431
TU201626 other upstream 2030743 69591135 ~ 69591722 (-) True G177487
TU201996 other upstream 2133217 69693609 ~ 69704399 (-) True LOC110494902
TU202994 other upstream 3000130 70560522 ~ 70560855 (-) True LOC110501848
TU203498 other upstream 3208766 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 3344980 70905372 ~ 70906254 (-) True G179215

Expression Profile