RNA id: TCONS_00029734


Basic Information

Item Value
RNA id TCONS_00029734
length 780
lncRNA type antisense_over
GC content 0.17
exon number 3
gene id XLOC_014314
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 44917099 ~ 44959698 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aagaaaacaaaaaacaaaacgaaaaacagaaacaaaacaaaaacaataaaaactaacaaaaacaaaaacaaaactgaaaaaaaacccattcaaaataacaacaaaacaattaaaaataaaactgaatataaaatcaaacaaacaaaaactaaacgaataataaacaaaataatcaaaaataaacaaaacaaaacagaaacaaaaagcTAACAAAAACGgaaccaaacaaaaaacaaaaaacaaacaaaaacaaaacaaataagttgaaaacaacaaaacaatcataaatagcaaaataaaaaaaacaaaacaaataaaacaaaataatcaaaaacaaacaaaacaaaacagaaacaaaaaactaatcgaacacaaaacaaccaaaaacatcaacaaaacaaaaaacaaaacaatcgaaaataacaaaatcaaaaaatcaaacaaaacaaaaaacaaaacaaatgaaaaaccaATTAATCAAACAGAcaaaactaaacagaaacaaagaaaactaacaaaaacaaaaccaaacaaaacaacaaaacaaaaaataaagctgaaaaaaacaaatcaaaccaagcaaaaaacaaacacaacaatcaaaaacatcaaaaaaaaaaaaaaaaaaaattttggggttattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataaatatatatatatatatatatatatatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0007220 Notch receptor processing biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0070765 gamma-secretase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030043 lncRNA upstream 1112689 43800832 ~ 43804410 (+) False XLOC_014302
TCONS_00030044 lncRNA upstream 1112689 43801177 ~ 43804410 (+) True XLOC_014302
TCONS_00030041 lncRNA upstream 1125523 43787003 ~ 43791576 (+) True XLOC_014300
TCONS_00030042 lncRNA upstream 1126383 43787142 ~ 43790716 (+) True XLOC_014301
TCONS_00028415 lncRNA upstream 1192244 43715970 ~ 43724855 (+) False XLOC_014297
TCONS_00030045 lncRNA downstream 399579 45359277 ~ 45365727 (+) True XLOC_014315
TCONS_00030046 lncRNA downstream 767516 45727214 ~ 45728062 (+) True XLOC_014317
TCONS_00030047 lncRNA downstream 1131619 46091317 ~ 46093652 (+) True XLOC_014321
TCONS_00028445 lncRNA downstream 1198444 46158142 ~ 46172318 (+) True XLOC_014324
TCONS_00029735 lncRNA downstream 1256637 46216335 ~ 46219040 (+) False XLOC_014325
TCONS_00028435 mRNA upstream 869923 44039849 ~ 44047176 (+) True XLOC_014313
TCONS_00028434 mRNA upstream 880307 44009473 ~ 44036792 (+) True XLOC_014312
TCONS_00028432 mRNA upstream 910654 44004348 ~ 44006445 (+) True XLOC_014311
TCONS_00028431 mRNA upstream 919038 43995936 ~ 43998061 (+) True XLOC_014310
TCONS_00028430 mRNA upstream 927637 43987389 ~ 43989462 (+) True XLOC_014309
TCONS_00028437 mRNA downstream 884665 45844363 ~ 45963264 (+) True XLOC_014318
TCONS_00028438 mRNA downstream 1002318 45962016 ~ 45967718 (+) True XLOC_014319
TCONS_00028439 mRNA downstream 1010994 45970692 ~ 45980732 (+) True XLOC_014320
TCONS_00028440 mRNA downstream 1135512 46095210 ~ 46100763 (+) True XLOC_014322
TCONS_00028441 mRNA downstream 1154130 46113828 ~ 46122870 (+) False XLOC_014323
TCONS_00028433 other upstream 884935 44009473 ~ 44032164 (+) False XLOC_014312
TCONS_00028411 other upstream 1251588 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028401 other upstream 1465152 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028380 other upstream 1836039 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028379 other upstream 1839220 43077744 ~ 43077879 (+) True XLOC_014279
TCONS_00028436 other downstream 549167 45508865 ~ 45508981 (+) True XLOC_014316
TCONS_00028450 other downstream 1283922 46243620 ~ 46280931 (+) False XLOC_014327
TCONS_00028459 other downstream 2339468 47299166 ~ 47309383 (+) False XLOC_014336
TCONS_00028462 other downstream 2346925 47306623 ~ 47306738 (+) True XLOC_014337
TCONS_00028470 other downstream 2614917 47574615 ~ 47574823 (+) True XLOC_014344

Expression Profile

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