RNA id: TCONS_00030045


Basic Information

Item Value
RNA id TCONS_00030045
length 597
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id XLOC_014315
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 45359277 ~ 45365727 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATAAGCCCACGGCGCAGTCTGAGCACTTGACCGCACATGCAGGACAACGATAGCAGAAGAGAAGCAGGAAGCGCATCATCGGCGGAAGATCCAGCGCCGATTGTGAGATTCTCACTTTCACATCAGGTTTGTTCAGCGGAGTGTTGGAGAGGACAGAAGACTGACTGTGAGAGTCCAGAAAGCCTGACAAGCTGTCCAGCATCAAAGTCTTCCTGCCATCAAACCCTAGAGGATGAAGATGTTGATCTGAGAGCTGAGCAGGTACATGTGCAGAGCCGCTCGGGGTCAGGATCTCTGACTGTGAAGGAGAGCGCAGAGTTAGTGGGAcagaaataagaaagaaagagcaAGAGGAAAAATGGAGGCCATGAGCACTTACTGCAGCTGTCACTGTAGGAGAGGATCTGCAGGAGCTTTATGGCAGCTGTGGATCGCCGTAATCTGCAGTTTTGTCTTCAAAGTTTTGTCCGTTTTAAAATTGAatcaatttagaaaaaaaaagaaaaaagaaaaactaaactaaatcaaAAGTAGAGAAGTCATGGTTCATGGCCAGTGGCTTTTCTAACTAGCAACTAGAGGCAGGGTTTTTTGTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029734 lncRNA upstream 399579 44917099 ~ 44959698 (+) False XLOC_014314
TCONS_00029733 lncRNA upstream 399579 44917099 ~ 44959698 (+) False XLOC_014314
TCONS_00029732 lncRNA upstream 399579 44917099 ~ 44959698 (+) True XLOC_014314
TCONS_00030043 lncRNA upstream 1554867 43800832 ~ 43804410 (+) False XLOC_014302
TCONS_00030044 lncRNA upstream 1554867 43801177 ~ 43804410 (+) True XLOC_014302
TCONS_00030046 lncRNA downstream 361487 45727214 ~ 45728062 (+) True XLOC_014317
TCONS_00030047 lncRNA downstream 725590 46091317 ~ 46093652 (+) True XLOC_014321
TCONS_00028445 lncRNA downstream 792415 46158142 ~ 46172318 (+) True XLOC_014324
TCONS_00029735 lncRNA downstream 850608 46216335 ~ 46219040 (+) False XLOC_014325
TCONS_00029736 lncRNA downstream 851382 46217109 ~ 46219040 (+) True XLOC_014325
TCONS_00028435 mRNA upstream 1312101 44039849 ~ 44047176 (+) True XLOC_014313
TCONS_00028434 mRNA upstream 1322485 44009473 ~ 44036792 (+) True XLOC_014312
TCONS_00028432 mRNA upstream 1352832 44004348 ~ 44006445 (+) True XLOC_014311
TCONS_00028431 mRNA upstream 1361216 43995936 ~ 43998061 (+) True XLOC_014310
TCONS_00028430 mRNA upstream 1369815 43987389 ~ 43989462 (+) True XLOC_014309
TCONS_00028437 mRNA downstream 478636 45844363 ~ 45963264 (+) True XLOC_014318
TCONS_00028438 mRNA downstream 596289 45962016 ~ 45967718 (+) True XLOC_014319
TCONS_00028439 mRNA downstream 604965 45970692 ~ 45980732 (+) True XLOC_014320
TCONS_00028440 mRNA downstream 729483 46095210 ~ 46100763 (+) True XLOC_014322
TCONS_00028441 mRNA downstream 748101 46113828 ~ 46122870 (+) False XLOC_014323
TCONS_00028433 other upstream 1327113 44009473 ~ 44032164 (+) False XLOC_014312
TCONS_00028411 other upstream 1693766 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028401 other upstream 1907330 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028380 other upstream 2278217 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028379 other upstream 2281398 43077744 ~ 43077879 (+) True XLOC_014279
TCONS_00028436 other downstream 143138 45508865 ~ 45508981 (+) True XLOC_014316
TCONS_00028450 other downstream 877893 46243620 ~ 46280931 (+) False XLOC_014327
TCONS_00028459 other downstream 1933439 47299166 ~ 47309383 (+) False XLOC_014336
TCONS_00028462 other downstream 1940896 47306623 ~ 47306738 (+) True XLOC_014337
TCONS_00028470 other downstream 2208888 47574615 ~ 47574823 (+) True XLOC_014344

Expression Profile

//