Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028445 |
| length | 615 |
| lncRNA type | retained_intron |
| GC content | 0.51 |
| exon number | 3 |
| gene id | XLOC_014324 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 46158078 ~ 46210904 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0008154 | actin polymerization or depolymerization | biological_process |
| GO:0045761 | regulation of adenylate cyclase activity | biological_process |
| GO:0000902 | cell morphogenesis | biological_process |
| GO:0007010 | cytoskeleton organization | biological_process |
| GO:0007163 | establishment or maintenance of cell polarity | biological_process |
| GO:0030864 | cortical actin cytoskeleton | cellular_component |
| GO:0008179 | adenylate cyclase binding | molecular_function |
| GO:0003779 | actin binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-1758 | Predicted to enable actin binding activity and adenylate cyclase binding activity. Predicted to be involved in cAMP-mediated signaling; cell morphogenesis; and regulation of adenylate cyclase activity. Predicted to act upstream of or within cytoskeleton organization. Predicted to be located in plasma membrane. Predicted to be active in cytoplasm. Is expressed in central nervous system; heart; male organism; muscle; and neural tube. Orthologous to human CAP2 (cyclase associated actin cytoskeleton regulatory protein 2). |
| ensembl_id | ENSDART00000162542 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00030047 | lncRNA | upstream | 64490 | 46091317 ~ 46093652 (+) | True | XLOC_014321 |
| TCONS_00030046 | lncRNA | upstream | 430080 | 45727214 ~ 45728062 (+) | True | XLOC_014317 |
| TCONS_00030045 | lncRNA | upstream | 792415 | 45359277 ~ 45365727 (+) | True | XLOC_014315 |
| TCONS_00029734 | lncRNA | upstream | 1198444 | 44917099 ~ 44959698 (+) | False | XLOC_014314 |
| TCONS_00029735 | lncRNA | downstream | 44017 | 46216335 ~ 46219040 (+) | False | XLOC_014325 |
| TCONS_00029736 | lncRNA | downstream | 44791 | 46217109 ~ 46219040 (+) | True | XLOC_014325 |
| TCONS_00030048 | lncRNA | downstream | 68189 | 46240507 ~ 46280931 (+) | False | XLOC_014327 |
| TCONS_00030049 | lncRNA | downstream | 250773 | 46423091 ~ 46438135 (+) | True | XLOC_014331 |
| TCONS_00030050 | lncRNA | downstream | 1016212 | 47188530 ~ 47191501 (+) | True | XLOC_014334 |
| TCONS_00028442 | mRNA | upstream | 9165 | 46113927 ~ 46148977 (+) | True | XLOC_014323 |
| TCONS_00028441 | mRNA | upstream | 35272 | 46113828 ~ 46122870 (+) | False | XLOC_014323 |
| TCONS_00028440 | mRNA | upstream | 57379 | 46095210 ~ 46100763 (+) | True | XLOC_014322 |
| TCONS_00028439 | mRNA | upstream | 177410 | 45970692 ~ 45980732 (+) | True | XLOC_014320 |
| TCONS_00028438 | mRNA | upstream | 190424 | 45962016 ~ 45967718 (+) | True | XLOC_014319 |
| TCONS_00028446 | mRNA | downstream | 50110 | 46222428 ~ 46238622 (+) | False | XLOC_014326 |
| TCONS_00028447 | mRNA | downstream | 50600 | 46222918 ~ 46238622 (+) | False | XLOC_014326 |
| TCONS_00028448 | mRNA | downstream | 65347 | 46237665 ~ 46238624 (+) | True | XLOC_014326 |
| TCONS_00028449 | mRNA | downstream | 67853 | 46240171 ~ 46257880 (+) | False | XLOC_014327 |
| TCONS_00028451 | mRNA | downstream | 87301 | 46259619 ~ 46303622 (+) | True | XLOC_014327 |
| TCONS_00028436 | other | upstream | 649161 | 45508865 ~ 45508981 (+) | True | XLOC_014316 |
| TCONS_00028433 | other | upstream | 2125978 | 44009473 ~ 44032164 (+) | False | XLOC_014312 |
| TCONS_00028411 | other | upstream | 2492631 | 43665391 ~ 43665511 (+) | True | XLOC_014295 |
| TCONS_00028401 | other | upstream | 2706195 | 43439401 ~ 43451947 (+) | False | XLOC_014288 |
| TCONS_00028380 | other | upstream | 3077082 | 43080925 ~ 43081060 (+) | True | XLOC_014280 |
| TCONS_00028450 | other | downstream | 71302 | 46243620 ~ 46280931 (+) | False | XLOC_014327 |
| TCONS_00028459 | other | downstream | 1126848 | 47299166 ~ 47309383 (+) | False | XLOC_014336 |
| TCONS_00028462 | other | downstream | 1134305 | 47306623 ~ 47306738 (+) | True | XLOC_014337 |
| TCONS_00028470 | other | downstream | 1402297 | 47574615 ~ 47574823 (+) | True | XLOC_014344 |
| TCONS_00028474 | other | downstream | 1845688 | 48018006 ~ 48018346 (+) | True | XLOC_014351 |
