RNA id: TU202294


Basic Information

Item Value
RNA id TU202294
length 527
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G178076
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70105354 ~ 70106158 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTTGAAAATGCTACCTCACACTCCGGCAGCACAACATCCCTGCTCGTCACTAAACTCAGGGCCCTGGGTGTGATAATCTTTCCGAACATTTTTCTATAGGAAGTTAAGCCCCGGAATTTTGGGAATGTTgcttaaattcattaaaaaaaaatgcttataacagtgaaccttttttgtgggatacacataaggcaattctaggtcttgtggcaaattttggttaaactatctccaattcaatggaatcacgtgtacagctgattctcaagatcttgcacactaatgagatgctattgagcccacactactacactgtttgAACCAatgactacatgctttctgtcctcacagttttgacccttgcctgtttctggactttgtacctgcctgcctgaccattctgccagccttgaccacgagcctgtctgccgctctgtacctcctggactctgatctggttttgccctttttgcctgtccatgaccattgtcttgcctacccctttggattaataaacattgtaag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202293 lncRNA downstream 455 70104674 ~ 70104899 (-) True G178075
TU202292 lncRNA downstream 1722 70103142 ~ 70103632 (-) True G178074
TU202274 lncRNA downstream 27847 70077177 ~ 70077507 (-) True G178056
TU202220 lncRNA downstream 159927 69927984 ~ 69945427 (-) True G178005
TU202166 lncRNA downstream 236557 69867581 ~ 69868797 (-) True G177969
TU202295 lncRNA upstream 368 70106526 ~ 70106743 (-) True G178077
TU202296 lncRNA upstream 823 70106981 ~ 70107239 (-) True G178078
TU202306 lncRNA upstream 16696 70122854 ~ 70123109 (-) True G178088
TU202497 lncRNA upstream 69083 70175241 ~ 70175794 (-) True LOC118937291
TU202469 lncRNA upstream 74213 70180371 ~ 70274289 (-) True G178227
XM_021570339.2 mRNA downstream 29729 69995090 ~ 70075625 (-) True LOC110494967
XM_021570331.2 mRNA downstream 60868 69995090 ~ 70044486 (-) False LOC110494967
XM_021570345.2 mRNA downstream 60869 69995090 ~ 70044485 (-) False LOC110494967
XM_021570346.2 mRNA downstream 60871 69995090 ~ 70044483 (-) False LOC110494967
XM_036954645.1 mRNA upstream 3019 70109177 ~ 70111705 (-) True LOC118941470
XM_036954652.1 mRNA upstream 6397 70112555 ~ 70114804 (-) False zgc:158868
XM_021570364.2 mRNA upstream 6397 70112555 ~ 70115100 (-) True zgc:158868
XR_005034535.1 mRNA upstream 68758 70174916 ~ 70176643 (-) False LOC118937291
XM_021570386.2 mRNA upstream 76338 70182496 ~ 70210312 (-) False LOC110495034
TU201996 other downstream 400955 69693609 ~ 69704399 (-) True LOC110494902
TU201626 other downstream 513632 69591135 ~ 69591722 (-) True G177487
TU198454 other downstream 3412504 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 3714588 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 3766968 66335412 ~ 66338386 (-) True G173675
TU202994 other upstream 454364 70560522 ~ 70560855 (-) True LOC110501848
TU203498 other upstream 663000 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 799214 70905372 ~ 70906254 (-) True G179215
TU203593 other upstream 820532 70926690 ~ 70938829 (-) False ttc23
TU203594 other upstream 820532 70926690 ~ 70944761 (-) False ttc23

Expression Profile