RNA id: TCONS_00029736


Basic Information

Item Value
RNA id TCONS_00029736
length 954
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id XLOC_014325
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 46216335 ~ 46219040 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACAAGATGACCACATTGCAGGATTTTATTTGTCACTTCATTGATtacaactttaaaaatatttagtttctaCATCATCtcacacatttaaaacaacaatataaagtCAACAGCTTCAAAAGCCAAAGGAGTCTCGTTTGTTAATTCAGTTTCTTGCTGTAAATGTCAGATCAGTGTTTGATGACCATGTTTCCCTCTGAATCCTGAGTAAAGAGCATCTCTGCGTCTGACTCTTCATCCTGACTGCTCCTGTAATCTGCAGGCTGTAGATCTGCGCTCTCTAAACACTGATCACGGTGAGCGATCACACAGAAACCTTCAGAATCCTGAGTAAACATCGACGAAACACTCTCTTCCTTACACGGATTACTGGGCGGACATCTGTATTTCCCCTTTAATCTGCATTTGGATGGACTGGAGATTGATTTATGCTTGAAAGGAGAGGATGGAGTGTTTTTAACAGGCGAGCTGTTCTCTTTTCCCATTCGTTTCAATGGAGATGCTTTCGTTTTTGGCTCTTTATGAAGATTTGCATGTGGTTTGTGTTCATTTACAGATCTGGATGTTAAGATGGACGTCCTAAATGAGGATTTTTGATCTCTTAGATGTTCGTTTATAGGACTTGGAGACTGAACGACGTGTCCATGGTGTGGATTTTCAGGATTCATCTGATTTGTATATACGTTTTCAGCATCTTGATCACTGTATTCTTCAGTGTCTGATTTATTTTGGTCAGTGTGATAAGAAATGAGTCTCCTTTTTCCAGGCGGTTGTTCTTCTTCCGGATCTTCTCCGTTTATGAAATGAAGAAAGCGCTGATGGTTATTATCACTGGCTGATGTTTCTTCTGAATCTCCATCATCTGATGTGTGAATGATCGAGTCAATTGATGGATCCAAACTGATGGCGTGTTTTCGCTTGGTGCTGGTGTTTGTCTCAGGGTTACAGTCTGAG

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048738 cardiac muscle tissue development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0055006 cardiac cell development biological_process
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0035051 cardiocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0048869 cellular developmental process biological_process
GO:0003013 circulatory system process biological_process
GO:0003015 heart process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0060047 heart contraction biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028445 lncRNA upstream 44791 46158142 ~ 46172318 (+) True XLOC_014324
TCONS_00030047 lncRNA upstream 123457 46091317 ~ 46093652 (+) True XLOC_014321
TCONS_00030046 lncRNA upstream 489047 45727214 ~ 45728062 (+) True XLOC_014317
TCONS_00030045 lncRNA upstream 851382 45359277 ~ 45365727 (+) True XLOC_014315
TCONS_00029732 lncRNA upstream 1257411 44917099 ~ 44959698 (+) True XLOC_014314
TCONS_00030048 lncRNA downstream 21467 46240507 ~ 46280931 (+) False XLOC_014327
TCONS_00030049 lncRNA downstream 204051 46423091 ~ 46438135 (+) True XLOC_014331
TCONS_00030050 lncRNA downstream 969490 47188530 ~ 47191501 (+) True XLOC_014334
TCONS_00030051 lncRNA downstream 1118542 47337582 ~ 47338157 (+) True XLOC_014339
TCONS_00028467 lncRNA downstream 1202020 47421060 ~ 47423627 (+) True XLOC_014340
TCONS_00028444 mRNA upstream 6205 46158078 ~ 46210904 (+) False XLOC_014324
TCONS_00028443 mRNA upstream 6217 46158078 ~ 46210892 (+) False XLOC_014324
TCONS_00028442 mRNA upstream 68132 46113927 ~ 46148977 (+) True XLOC_014323
TCONS_00028441 mRNA upstream 94239 46113828 ~ 46122870 (+) False XLOC_014323
TCONS_00028440 mRNA upstream 116346 46095210 ~ 46100763 (+) True XLOC_014322
TCONS_00028446 mRNA downstream 3388 46222428 ~ 46238622 (+) False XLOC_014326
TCONS_00028447 mRNA downstream 3878 46222918 ~ 46238622 (+) False XLOC_014326
TCONS_00028448 mRNA downstream 18625 46237665 ~ 46238624 (+) True XLOC_014326
TCONS_00028449 mRNA downstream 21131 46240171 ~ 46257880 (+) False XLOC_014327
TCONS_00028451 mRNA downstream 40579 46259619 ~ 46303622 (+) True XLOC_014327
TCONS_00028436 other upstream 708128 45508865 ~ 45508981 (+) True XLOC_014316
TCONS_00028433 other upstream 2184945 44009473 ~ 44032164 (+) False XLOC_014312
TCONS_00028411 other upstream 2551598 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028401 other upstream 2765162 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028380 other upstream 3136049 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028450 other downstream 24580 46243620 ~ 46280931 (+) False XLOC_014327
TCONS_00028459 other downstream 1080126 47299166 ~ 47309383 (+) False XLOC_014336
TCONS_00028462 other downstream 1087583 47306623 ~ 47306738 (+) True XLOC_014337
TCONS_00028470 other downstream 1355575 47574615 ~ 47574823 (+) True XLOC_014344
TCONS_00028474 other downstream 1798966 48018006 ~ 48018346 (+) True XLOC_014351

Expression Profile

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