RNA id: TU202594


Basic Information

Item Value
RNA id TU202594
length 1516
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G178335
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70325835 ~ 70327350 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAGTAAATACAGATTCAGCATCAGTCATCAccattttattgattatttataaATGTAGCAAAACATActtcatacagacagacacatagtgAAAGTGAAAAGAATTTGAACCAATGTTGAAAACTCAGTCCAATAAGACCGGAACACGGCCTTATGGCTTTCTGTACAAAAGATACGCTTCTACTGAAGATTGTCAGTACACACTATTCAATTGAATGACATATATCGGGATGTTGTTCTCCCAAGCCCAGTGTCTCTGAACTTGGTCCAGTGTGTGGTCTGTCCACAGTGGAAAAACCCCATAGATGAATGTCCCTCAGAGGCTTATTCATCCCCGGGGCTCTAAATAAGCATTCTGTTTGATGGGCCGCCTTTAGGATGACAGTATCCCATATTCAAAGGGAGGAATATATAATCTGTTGAATTTGTACCCTTCGTCTCATCTGCTTCTTTCTTTGAGAGATGTATGGTCAATGTAGTACAATGAGATTACAGACAGAATGCTTTCTTCCTTTTCAACATATCATAAAAAGAAAGAGTGCACAGTTGTACATGCCAATCATACAGAGTCCCAAGCATATAACACAACACTTTTGTTCTATAAAACTGCTAGTTCAGAACTATACAATTCAGGTACATTAACATCATATCTATGCAAAGAATAATGATACGTATGAGCTGATGTATACAGGAATGAAAAAGTATTTTGTAAAGCAAGATAACAGAGAGGCAGGCAAAAAAAGTAATAGCTTTTACTCACCAAGTGTTATTACACTGGCACAATGCACACAAGCAgatacatacacgcacacacacaaacatacgagcacacacacacacacacacatacgcacagacacacgctcgcacgcaaacacacacaattTAGAAATAGAGAGTTTGCCAACAGCCTAAAATGTGTTATCCACTAACCTAAAATGTTGCAGTGTTAGCTGATGTTATAGCCAGACAATATTCTTTAAATATTTAAATTTGGTTAATAATCAGCTAAATCCACTTGATATATTTTACAATGCAGATGAAAATAGATTTCCTTCAGGTTTTCACTCCAGTTTACTACCGCTTCCCTGACCATCCCACATAACTTTGCTGCATTAGCAAACAAGATTAATTGCCAATAAAAAATGCAAATCCACTGCAAATCCAAATTGACCGCTAAAGCTGTTGAGTAGGGCAAAGCAAGTAGAAAACATGAACTTTTTAAAAGGTACAGTAACATTTCCAACATGGTAGTTTATCTCAGACGTACATTCAATTAGTACTAGGTTTTAAACGCAGTTAACTTTTCATGTCATGGAGTCAAACAGGAGTTATCCTCATGGTGTTGAGTATTACAAAACAAAAGTCCTTCAGAGTAAAACCTAACTTATTTCTATACCGTTCCTATTCCCCCAGGGTCTCTGCttgatatgtacatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202552 lncRNA downstream 41926 70283601 ~ 70283909 (-) True G178306
TU202547 lncRNA downstream 49322 70275646 ~ 70276513 (-) True G178301
TU202469 lncRNA downstream 51546 70180371 ~ 70274289 (-) True G178227
TU202497 lncRNA downstream 150041 70175241 ~ 70175794 (-) True LOC118937291
TU202306 lncRNA downstream 202726 70122854 ~ 70123109 (-) True G178088
TU202609 lncRNA upstream 26288 70353638 ~ 70354027 (-) False G178349
TU202610 lncRNA upstream 26288 70353638 ~ 70354068 (-) False G178349
TU202608 lncRNA upstream 26381 70353731 ~ 70354027 (-) False G178349
TU202611 lncRNA upstream 26381 70353731 ~ 70354068 (-) True G178349
TU202618 lncRNA upstream 40129 70367479 ~ 70369087 (-) True G178356
XM_021570386.2 mRNA downstream 115523 70182496 ~ 70210312 (-) False LOC110495034
XM_021570394.2 mRNA downstream 115523 70182496 ~ 70210312 (-) True LOC110495034
XR_005034535.1 mRNA downstream 149192 70174916 ~ 70176643 (-) False LOC118937291
XM_021570364.2 mRNA downstream 210735 70112555 ~ 70115100 (-) True zgc:158868
XM_036954652.1 mRNA downstream 211031 70112555 ~ 70114804 (-) False zgc:158868
XM_021570520.2 mRNA upstream 75288 70402638 ~ 70546729 (-) False LOC110495228
XM_021570521.2 mRNA upstream 75288 70402638 ~ 70546729 (-) True LOC110495228
XR_005039462.1 mRNA upstream 213204 70540554 ~ 70540609 (-) True LOC118944152
LOC110501848 mRNA upstream 224913 70552263 ~ 70642587 (-) False LOC110501848
XM_021570536.2 mRNA upstream 385839 70713189 ~ 70731355 (-) False chka
TU201996 other downstream 621436 69693609 ~ 69704399 (-) True LOC110494902
TU201626 other downstream 734113 69591135 ~ 69591722 (-) True G177487
TU198454 other downstream 3632985 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 3935069 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 3987449 66335412 ~ 66338386 (-) True G173675
TU202994 other upstream 233172 70560522 ~ 70560855 (-) True LOC110501848
TU203498 other upstream 441808 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 578022 70905372 ~ 70906254 (-) True G179215
TU203593 other upstream 599340 70926690 ~ 70938829 (-) False ttc23
TU203594 other upstream 599340 70926690 ~ 70944761 (-) False ttc23

Expression Profile