RNA id: TCONS_00028448


Basic Information

Item Value
RNA id TCONS_00028448
length 960
RNA type mRNA
GC content 0.34
exon number 1
gene id XLOC_014326
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 46222428 ~ 46238624 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGACCACACTGAGCAGCATGTCTGCGTCTGATGAGCTGGACGACTCTCAGGTTCGCCAGATGCTCTTCGATCTGGAGTCTGCATACAACGCCTTCAATCGTTTCCTACACTCCTCCTAAACGCTCCGACCCTTTCAGAGCTCCTTTTCACCAGCTTTTAACATGTTGCCCTTGTTTCGGAAACATTGATCTGTTATATAGAAATCCCAATTAATGTACTGTTTACTAAAGCTTCTAATATTCAGTAAGGATTGTATCACTCTGACACTTGTTTTCTCCTTTATTTCTGTCACAATAGACTGACGTAACCAGTAGGCATATGCATTTAGTTCAGGGTGGGCTTTATAAGGATCAGTGTATTATAGAAAGATGTTAAATGAACATACTTTATGGATCACCTGATATATATAATACAGCAAGGATTGATTAGGAGTTGTCACTACTGGATTTTATTTGGCAATACACTACAGTATAGTTCAGTTAATTGATGTATTTActgacaaacaatgaacaatttaTAACAGTGTGTGCTCGTCTTATTCACATTAGTAAAACTACAGTTGTTCATGCACAGTTttggattttattaatgcattagtaagtgttaaactatgattaatacatgctgatttgttcatgtttgtaaatacattaactaatggagccttattgtaaagtgtgtccTTTTATTTTAAGCATATAAACCCATTTTGGTCGGCTTCAGACtttcttttttgttaaaatattatttcccACCGTATTTAATTGTGCATTTAAAGTACTTTAACATTTGCTGGTTGATAACCTTGACTTTTATATCAGATCTTGATTGAGAACTGTACTCTTTTTCTTGGCACGGTGTTGGTCTGTCTCTCTTCGGTATGTAATAagtcatatttattaaattaccattgtaaataaaatagttttgaaataaactacaTGGCTTTCAAACCTAA

Function

GO:

id name namespace
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway biological_process
GO:0015031 protein transport biological_process
GO:0032509 endosome transport via multivesicular body sorting pathway biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005768 endosome cellular_component
GO:0000813 ESCRT I complex cellular_component
GO:0044877 protein-containing complex binding molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04131 Membrane trafficking
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-040426-1527 Acts upstream of or within retina development in camera-type eye. Predicted to be located in endosome. Predicted to be part of ESCRT I complex. Is expressed in eye; neural tube; and pronephric duct. Orthologous to human VPS28 (VPS28 subunit of ESCRT-I).

Ensembl:

ensembl_id ENSDART00000159391

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029735 lncRNA upstream 18625 46216335 ~ 46219040 (+) False XLOC_014325
TCONS_00029736 lncRNA upstream 18625 46217109 ~ 46219040 (+) True XLOC_014325
TCONS_00028445 lncRNA upstream 65347 46158142 ~ 46172318 (+) True XLOC_014324
TCONS_00030047 lncRNA upstream 144013 46091317 ~ 46093652 (+) True XLOC_014321
TCONS_00030046 lncRNA upstream 509603 45727214 ~ 45728062 (+) True XLOC_014317
TCONS_00030048 lncRNA downstream 1883 46240507 ~ 46280931 (+) False XLOC_014327
TCONS_00030049 lncRNA downstream 184467 46423091 ~ 46438135 (+) True XLOC_014331
TCONS_00030050 lncRNA downstream 949906 47188530 ~ 47191501 (+) True XLOC_014334
TCONS_00030051 lncRNA downstream 1098958 47337582 ~ 47338157 (+) True XLOC_014339
TCONS_00028467 lncRNA downstream 1182436 47421060 ~ 47423627 (+) True XLOC_014340
TCONS_00028444 mRNA upstream 26761 46158078 ~ 46210904 (+) False XLOC_014324
TCONS_00028443 mRNA upstream 26773 46158078 ~ 46210892 (+) False XLOC_014324
TCONS_00028442 mRNA upstream 88688 46113927 ~ 46148977 (+) True XLOC_014323
TCONS_00028441 mRNA upstream 114795 46113828 ~ 46122870 (+) False XLOC_014323
TCONS_00028440 mRNA upstream 136902 46095210 ~ 46100763 (+) True XLOC_014322
TCONS_00028449 mRNA downstream 1547 46240171 ~ 46257880 (+) False XLOC_014327
TCONS_00028451 mRNA downstream 20995 46259619 ~ 46303622 (+) True XLOC_014327
TCONS_00028452 mRNA downstream 70929 46309553 ~ 46333810 (+) True XLOC_014328
TCONS_00028453 mRNA downstream 104761 46343385 ~ 46362232 (+) False XLOC_014329
TCONS_00028454 mRNA downstream 104768 46343392 ~ 46359570 (+) True XLOC_014329
TCONS_00028436 other upstream 728684 45508865 ~ 45508981 (+) True XLOC_014316
TCONS_00028433 other upstream 2205501 44009473 ~ 44032164 (+) False XLOC_014312
TCONS_00028411 other upstream 2572154 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028401 other upstream 2785718 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028380 other upstream 3156605 43080925 ~ 43081060 (+) True XLOC_014280
TCONS_00028450 other downstream 4996 46243620 ~ 46280931 (+) False XLOC_014327
TCONS_00028459 other downstream 1060542 47299166 ~ 47309383 (+) False XLOC_014336
TCONS_00028462 other downstream 1067999 47306623 ~ 47306738 (+) True XLOC_014337
TCONS_00028470 other downstream 1335991 47574615 ~ 47574823 (+) True XLOC_014344
TCONS_00028474 other downstream 1779382 48018006 ~ 48018346 (+) True XLOC_014351

Expression Profile

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