RNA id: TU202752


Basic Information

Item Value
RNA id TU202752
length 2762
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G178484
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70386034 ~ 70388902 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agacagtgtggtgaagaaggcgcaacagtgcacaaacctttacagatgcaatTTCCAGTTTtcataacacctttatttaactatgtaaCCAGTCTCAAATtcacagagctatggatgcaagcactgaccatccatgatatcaaatgtATAATTTTAACCATGTCTTCAGGCTATACAGTATACATTTAGGTTGTTTAAAAACATTGACGTAACAcgtgaggcatttataagtggGTATATATATCACAAGGACTTAATTAACATGgtcatcactaaggacttaacatgaTCCACACACCCTTGAAGAGTGCACcgcttggtatggcaactgcactgctCATGACTGCAAAGCGATACTGAGGGTGGTAAGGAGAGCGGATGGCCTAGTACATCAAAAGGGCCAAGGTCCCTGCCAACCAGAGGGGTATGTTACGAttgaagctagatctactcaagCTTTTATACATTTTGCAAGCTTCAGTTAACTTCACGTTCAAGCTTCATCAATACTACGAAGGTGGATATTGATAATGCGGCTGCCGCTAACTCAAGCAAGGTTAAACTGCAGCACTTCTAATAGCCTTTTTCACACCATAGTCTGCTGAATTTGAAAGATAATTTTGGCAATAATGAAAATGTGGCACTGCCTTGCCCCTGTGTTGGTgtcagcattgtctcaatgaagagtttgtCGTTCAACATGCACGCACAGTTACAAGCTTGCTGGAGTTAGCGGCAATCGTACTAGCAATACCCTCGTCATAGAACAgctgaagcctgagctggaatgggTAGATACTTGATGCCGACTAGCTTTAGAAAACCCGGAGTATATCTAGCTTCAATCATAGAATACCCTTCAGGTCTGTGGTGGTGAAGCCTGTAGGTATGAATTTGCTGACTGTCATATTCGGAGATGTCAGCAGGGGAAATCGTTGGCTACTTTTCCTGGCTGCTGGGAACTTTCCAAGGGAAAAGAGGGCATGTGATTTCACGCCAcaagatttttttaaatccattcaACCACAGATCACAGGGTCAGTTCCCATGTTCTCCAGGTAATTAGCATCCATTGTGGGCTGTCATCCGAGAGGGACCAGTGACATTTTCACAGGCTATTCTCCCCCATTAAAAGTGGATCAAGCTGGGGATTTAGCAGAACCGCCTGGCCCCCATCACCTTTAATGGAATTAGTCTACTTCACAACCAAGGACGCGACTGAATGGGCGACAAGGCAACTGATCCTCAGACAGCTCTGATGGAATTTGAGACAGAATAGTGGGATGGGGAGTTTTAGCATCTCTGGTATGGGATTACACTACCGAGGTTATTCTGATATGTGAACCACTTATAAAAATGCAGTTCTGTAGAAAATCCCAACAGGTGCATTCACTCTTTTCATATATATGACACTGTGTGGGACACAGAGTTTTAAACACCAAAGTACATGAATGCAAGAGATGTCCTTAGAAAACTGTTTGACCATGACTTACTTTGAGGTAAAATATTTGATCATTGATCAAGAATGTAGCCACTTAGGATGACAGCTATTTTACCAAGAGGTATTATAAACCACTCACTCATGCTGACAGAACATGACAAGGCCATTCATCTCGTTTTAGCTGAAGATTACATTTCAGATGCTGTTAAAACTGATCTTCAGTTGCCACAAATATGTTGATAGCACACTTAAACCACTTTCAGGCCTCAAGTGGTTTATTGTGAAGATGGGTCCATGTCCATAGTCATCTCTTGTGTAGATCCATCGAGGCACCCAGCTACATGGCTCAATGCCAAATGAATGGGAAAGATAAACAATATAATTTCATCAATTCAGATGCTGCCTATCATTCacatgccatttgggatggggcAGTATATAGATGAGGCGTGAGTCATCTTCGACATTCGAACACTTAAACTTCGGGTAAATTTAGATTGTCTTGCATGTCGTAGCTTTCCTCAACATACTTTAACACAGATTTCCCAACTGTTAATTTTCTGAATGCCAAACATTACAAAGATAAACAAGGGAACCAAGGCTTACACTTCATAATGAATTTGAAAAGTTTGCCAATGCTACTCCATTAACAGTTAAATCATGATGGGTATTAGAATGCCTCACCAGAGCTCATTAtacaaaatataaaaacaaacaaGACAACCAATTAAGCAACACGTAATCGCCGTAACATGAAGTACTAAATAAGGATATCAGTACATCAATTGTCCAATTAATCTGACTTTAAAAGAACACAGGGAAGATGAGGCCAATCGGGGGACGATGCAGATTCAATAAATACAAAAAGTGGACAGACATTTCAAACAAACTCCATTTGATCAGTGGAAAGAAAAGCCCCTTTGAAGAGTGGAGGCAAGATCCTGTGGAAAACATTGACTGGGTTTGTAGGCTGCATATTTCAAAGTCAAACAACCTGCCTATGAATCTTCTCCAACAGCCCCAACTCAAAGGCAGAAGCACACACGGTCTCAACATCTCAGCATAGTCTTACAGAGTTCAGGGCCTTGTGTACTTTGGCTTAATAGTCTGTGGTGGTTGGGAAGGCAGCCCCACACTGTGGGGTTCTTGCCTGTTGGTGccagttgttgttgctgctgctgaaaGTAAGTTGGACGTTTGACTCTGGGTTTCCGTCATTTGGGCTTGCTTTTGGATTTGGTGAGCTGCACCACAAAGAAGGACAGCACAACCATGGCTCCCAGGAAGGCAAACATGGGGATGGTCTGgcccacttcctggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202751 lncRNA downstream 231 70385137 ~ 70385803 (-) True G178483
TU202750 lncRNA downstream 920 70384774 ~ 70385114 (-) True G178482
TU202743 lncRNA downstream 14658 70371115 ~ 70371376 (-) True G178476
TU202618 lncRNA downstream 16947 70367479 ~ 70369087 (-) True G178356
TU202611 lncRNA downstream 31966 70353731 ~ 70354068 (-) True G178349
TU202753 lncRNA upstream 371 70389273 ~ 70389585 (-) True G178485
TU203448 lncRNA upstream 296014 70684916 ~ 70685225 (-) True G179139
TU203443 lncRNA upstream 300351 70689253 ~ 70690634 (-) True G179134
TU203450 lncRNA upstream 302688 70691590 ~ 70691865 (-) True G179141
TU203508 lncRNA upstream 389534 70778436 ~ 70778692 (-) True G179178
XM_021570386.2 mRNA downstream 175722 70182496 ~ 70210312 (-) False LOC110495034
XM_021570394.2 mRNA downstream 175722 70182496 ~ 70210312 (-) True LOC110495034
XR_005034535.1 mRNA downstream 209391 70174916 ~ 70176643 (-) False LOC118937291
XM_021570364.2 mRNA downstream 270934 70112555 ~ 70115100 (-) True zgc:158868
XM_036954652.1 mRNA downstream 271230 70112555 ~ 70114804 (-) False zgc:158868
XM_021570520.2 mRNA upstream 13736 70402638 ~ 70546729 (-) False LOC110495228
XM_021570521.2 mRNA upstream 13736 70402638 ~ 70546729 (-) True LOC110495228
XR_005039462.1 mRNA upstream 151652 70540554 ~ 70540609 (-) True LOC118944152
LOC110501848 mRNA upstream 163361 70552263 ~ 70642587 (-) False LOC110501848
XM_021570536.2 mRNA upstream 324287 70713189 ~ 70731355 (-) False chka
TU201996 other downstream 681635 69693609 ~ 69704399 (-) True LOC110494902
TU201626 other downstream 794312 69591135 ~ 69591722 (-) True G177487
TU198454 other downstream 3693184 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 3995268 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 4047648 66335412 ~ 66338386 (-) True G173675
TU202994 other upstream 171620 70560522 ~ 70560855 (-) True LOC110501848
TU203498 other upstream 380256 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 516470 70905372 ~ 70906254 (-) True G179215
TU203593 other upstream 537788 70926690 ~ 70938829 (-) False ttc23
TU203594 other upstream 537788 70926690 ~ 70944761 (-) False ttc23

Expression Profile