RNA id: TU203551


Basic Information

Item Value
RNA id TU203551
length 1311
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G179216
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70903945 ~ 70905255 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatgcatagtcactttacaaatgacctcgactaacctgtaccccctcacattgactcggtacctcctgtatatatcctccttattgttatgtcattttcttgtaTTACTTTTTGATTCGATTTTTTCAAACTTGAGTTAATTTAGCAATTATTTTCTTAACTATATTTTTtgaactgcattattggttaagggcttgtaagtaagcattttcacggtaaggttgtattcgggacaaataaaatttgatttgacatgtagTTGATACAGAACTTTTTAAGCATGGGACCAGATATAATTAGAGCCACCCTAGCGCCATCCCATCTCCACACCAACCGGGTTtgggtgtggtgtgttttgttaATAATGTTATAACCTTATACAGAGTAATGAGAAAAAGTGAGACGTACTTTTCTTTTCATACACACTTAAAAAGAGTGAGGTAGATATATACTTGAAGGGAAGGGGGGAAAAAGTCCCCCAGCCATGACACCAAAGAAAGTACATATCAAAAATCAAACTTTATAATGAATGAAGGGGCATTTATACAGTGATTTAAACTGATATCacaaaaggaaaataaaaaaataaataacaatcctACAGAGAATAACTTCAAAGCTGGAAACTTTTTCAAAAGATGAGGAGAAATCCTTCAAAAACACTTTTCATACTGACACCCCCAGTAAGACCTATTCAATTCATGACATTGAAATGTGACCACTTCCCTGGACTTTAACCCATCCTTATTTGGTGTACAGGCGCCATGTTTAAGGAGACAAACAATagaaactgttttcactttgatcGTAAGAGAATGAGTATGACAACACAAATTAAATGAATGATAAAGGAGAATAAGCAGTAATGCTGCACTTGAAATCTAAGACACAAAAAGAGAACTTTGATTATGGATGAGCATTATTTGAGAGGATGGCGAGTGGTTGGGATCATTAAGGCAAACAAGACAACCCAATTAGCCCTATCAATTGAGAGGCAGGAAAAAGAATGGGTTAAAACACCAGATCCAGTAGAAAAAAGAAGATCCTGTGCAACTAATCCTGACTTCAAAAGGAGGCACTGGGGGAGGCAGGTGTACTGCACATTTCAGTGTGgggctggaggggaggggagagggcacTATTGGACTCAACAGAGAGGTGAAACAAGCAGAGGACAGTAATGAGAATGTATGGAGAAAGCAAAACATGTACTTCGACCTGAGATTAAGTTGCACCTAGGGGGCAATAACTAGGTACTAGACAACGGGTACAAAAAGGGTGCCAAACTTACACACTCGCACACGGAGCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203588 lncRNA downstream 28776 70874750 ~ 70875169 (-) True G179252
TU203585 lncRNA downstream 32943 70870800 ~ 70871002 (-) True G179249
TU203575 lncRNA downstream 45437 70858300 ~ 70858508 (-) True G179240
TU203571 lncRNA downstream 53978 70849586 ~ 70849967 (-) True G179236
TU203570 lncRNA downstream 55109 70848631 ~ 70848836 (-) True G179235
TU203643 lncRNA upstream 81843 70987098 ~ 70987358 (-) True G179305
TU203651 lncRNA upstream 95378 71000633 ~ 71070204 (-) False G179310
TU203666 lncRNA upstream 101434 71006689 ~ 71007918 (-) True G179320
TU203656 lncRNA upstream 174258 71079513 ~ 71093345 (-) True G179311
TU203719 lncRNA upstream 195264 71100519 ~ 71100755 (-) True G179372
XR_005037732.1 mRNA downstream 127964 70773892 ~ 70775981 (-) True LOC118941475
XM_021570612.2 mRNA downstream 130663 70769140 ~ 70773282 (-) False fam169b
XM_021570643.2 mRNA downstream 130665 70769140 ~ 70773280 (-) False fam169b
XM_021570677.2 mRNA upstream 21377 70926632 ~ 70945359 (-) False ttc23
XR_005037743.1 mRNA upstream 199051 71104306 ~ 71105731 (-) False LOC118941478
XR_005037744.1 mRNA upstream 229010 71134265 ~ 71164057 (-) False LOC110495479
XM_021570764.2 mRNA upstream 516754 71422009 ~ 71429327 (-) False LOC110495486
XM_021570772.2 mRNA upstream 518905 71424160 ~ 71429323 (-) False LOC110495486
TU203498 other downstream 131409 70769158 ~ 70772536 (-) True fam169b
TU202994 other downstream 343090 70560522 ~ 70560855 (-) True LOC110501848
TU201996 other downstream 1199546 69693609 ~ 69704399 (-) True LOC110494902
TU201626 other downstream 1312223 69591135 ~ 69591722 (-) True G177487
TU198454 other downstream 4211095 66692408 ~ 66692850 (-) True G174505
TU203550 other upstream 117 70905372 ~ 70906254 (-) True G179215
TU203593 other upstream 21435 70926690 ~ 70938829 (-) False ttc23
TU203594 other upstream 21435 70926690 ~ 70944761 (-) False ttc23
TU203595 other upstream 38372 70943627 ~ 70944761 (-) True ttc23
TU203653 other upstream 92790 70998045 ~ 71035214 (-) False G179310

Expression Profile