RNA id: TU203651


Basic Information

Item Value
RNA id TU203651
length 1362
lncRNA type antisense_over
GC content 0.49
exon number 5
gene id G179310
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70998045 ~ 71070204 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCTTGACTAGGGGGCCTCTGCTGGCCCCCGCTGGAGCCCACATTCCTGTGTAAGGAGGCCTGAGCGGGAGAGAGCATCCCACTGTCGCTCAGAGAGGCTACGGCCTGGGCCTGGCTGCTCATGGAGCCTCCTGGGTTGTAGGACATGGTGTTCTGGTTGGAGACTGGCACTGCCACATGCATGGAGAAGTTCTGCTGGGGCAGCGCTGTGGGACCACAGCGCTTGTACATTAAATCACTCTCTTCGCTTAGTTTGCCGAAACGGTCGTCCATGAGGGGGCTGTGCCCAAAACAGTCATCTGGATCAGGACTGGCACACAGGTCATTATGGCCTTTGTTTCTTAATTTCTCGACAATGTCAGAGTTAGTTCTGCTCTCGTGGGGCTCGTTGTACTCAGTGTATTTGAGCAGGACCTTGTCCATGTCTGTGCTCGCATACTGAAACAGTTTGTTTGAGCTGTTGAATATGATCAGGGCTATCTCACAGTCACATAGAACGCTGAGCTCATAGGCCTTCTTCATTAGCCCAAACTTCCTCTTCGTGAAGGTAACCTGCCTGTTCCTCTCATCCATGATCCTGGTGATCTGTATCTTCTTCCGTCCCATCTCTGCGTTCTGTTCGGTCTCTCTGACACTTCAAGAATATCAGAAAAACTACCGAGCTCGTCTTCTTCCTTATCTCCTAGCACATTGTAcaacactctctcttctctctctctctggctctgtcgtTTTCGTGACCACACCACaatCCAACTATCAAAGCAGTGATAACCTCTTTATCGGACCAAGAATATCcagctcctgtctgtctgtctgtctcttcttttAGCCTTCAATGCTTCCCTCACTCGCGTTAAGCTTCCTGCAGATTTCTCCTCCTTGGGAAAAATGtcctgggagggggagaggagagaaagtgtTTTGCTCAGTGATTCAGAGGCATGGTGTCAACGGCAGCATTCTTTTTCTGACAACCAGCATTAATTGCAGATCAGACTCGCCCACACACTCCACATTTCTCCTGTGTCTCCTGGAAGGAGCTGAGATCAGACTGTGATATTCTGGTGCTATGACGAGGAGGGTTGTGGGAGACCCTCCAGGCCCACACTTATCGCACCAATCACCACCTCAGAACTTATCCCTTTTACCTGGGTCAACTTTCTCCACTCAAACCAAAGGCTGTATTTACACATCTATCAATTTATAAAGAGACATTTAGGCCTATACACACCCAGGATGTAATGTGGTAAAAGTTTAATTTATTTGACCTGGTAAAGGTCAAATTCATTTGATACCTTGTTCTACTGCACCCTGACATAACACTAGAGCGTAAAAATGCAGCTCATGTTGCAGTAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203643 lncRNA downstream 13275 70987098 ~ 70987358 (-) True G179305
TU203551 lncRNA downstream 95378 70903945 ~ 70905255 (-) True G179216
TU203588 lncRNA downstream 125464 70874750 ~ 70875169 (-) True G179252
TU203585 lncRNA downstream 129631 70870800 ~ 70871002 (-) True G179249
TU203575 lncRNA downstream 142125 70858300 ~ 70858508 (-) True G179240
TU203656 lncRNA upstream 9309 71079513 ~ 71093345 (-) True G179311
TU203719 lncRNA upstream 30315 71100519 ~ 71100755 (-) True G179372
TU203720 lncRNA upstream 30667 71100871 ~ 71101149 (-) True G179373
TU203726 lncRNA upstream 33875 71104079 ~ 71105514 (-) False LOC118941478
TU203722 lncRNA upstream 34125 71104329 ~ 71105514 (-) False LOC118941478
XM_021570677.2 mRNA downstream 55274 70926632 ~ 70945359 (-) False ttc23
XR_005037732.1 mRNA downstream 224652 70773892 ~ 70775981 (-) True LOC118941475
XM_021570612.2 mRNA downstream 227351 70769140 ~ 70773282 (-) False fam169b
XR_002469414.2 mRNA downstream 227353 70769140 ~ 70773280 (-) False fam169b
XR_005037743.1 mRNA upstream 34102 71104306 ~ 71105731 (-) False LOC118941478
XR_005037744.1 mRNA upstream 64061 71134265 ~ 71164057 (-) False LOC110495479
XM_021570764.2 mRNA upstream 351805 71422009 ~ 71429327 (-) False LOC110495486
XM_021570772.2 mRNA upstream 353956 71424160 ~ 71429323 (-) False LOC110495486
XM_021570783.2 mRNA upstream 353956 71424160 ~ 71432121 (-) True LOC110495486
TU203594 other downstream 55872 70926690 ~ 70944761 (-) False ttc23
TU203595 other downstream 55872 70943627 ~ 70944761 (-) True ttc23
TU203593 other downstream 61804 70926690 ~ 70938829 (-) False ttc23
TU203550 other downstream 94379 70905372 ~ 70906254 (-) True G179215
TU203498 other downstream 228097 70769158 ~ 70772536 (-) True fam169b
TU203749 other upstream 64330 71134534 ~ 71142184 (-) True LOC110495479
TU204130 other upstream 404168 71474372 ~ 71474979 (-) True G179754
TU205184 other upstream 1040764 72110968 ~ 72111663 (-) True G180716
TU206204 other upstream 1802540 72872744 ~ 72873745 (-) True c2cd4a
TU207073 other upstream 1957180 73027384 ~ 73066724 (-) False G182494

Expression Profile