Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028454 |
| length | 1149 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 8 |
| gene id | XLOC_014329 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 46343385 ~ 46362232 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006882 | cellular zinc ion homeostasis | biological_process |
| GO:0071577 | zinc ion transmembrane transport | biological_process |
| GO:0031018 | endocrine pancreas development | biological_process |
| GO:0055085 | transmembrane transport | biological_process |
| GO:0042593 | glucose homeostasis | biological_process |
| GO:0006812 | cation transport | biological_process |
| GO:0009749 | response to glucose | biological_process |
| GO:0006829 | zinc ion transport | biological_process |
| GO:0061088 | regulation of sequestering of zinc ion | biological_process |
| GO:0030073 | insulin secretion | biological_process |
| GO:0010043 | response to zinc ion | biological_process |
| GO:0003323 | type B pancreatic cell development | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0008324 | cation transmembrane transporter activity | molecular_function |
| GO:0005385 | zinc ion transmembrane transporter activity | molecular_function |
| id | description |
|---|---|
| ko02000 | Transporters |
| id | description |
|---|---|
| ZDB-GENE-060315-10 | Predicted to enable zinc ion transmembrane transporter activity. Acts upstream of or within glucose homeostasis and type B pancreatic cell development. Predicted to be located in transport vesicle membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to several human genes including RPRD1A (regulation of nuclear pre-mRNA domain containing 1A). |
| ensembl_id | ENSDART00000193561 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00030048 | lncRNA | upstream | 62461 | 46240507 ~ 46280931 (+) | False | XLOC_014327 |
| TCONS_00029735 | lncRNA | upstream | 124352 | 46216335 ~ 46219040 (+) | False | XLOC_014325 |
| TCONS_00029736 | lncRNA | upstream | 124352 | 46217109 ~ 46219040 (+) | True | XLOC_014325 |
| TCONS_00028445 | lncRNA | upstream | 171074 | 46158142 ~ 46172318 (+) | True | XLOC_014324 |
| TCONS_00030047 | lncRNA | upstream | 249740 | 46091317 ~ 46093652 (+) | True | XLOC_014321 |
| TCONS_00030049 | lncRNA | downstream | 63521 | 46423091 ~ 46438135 (+) | True | XLOC_014331 |
| TCONS_00030050 | lncRNA | downstream | 828960 | 47188530 ~ 47191501 (+) | True | XLOC_014334 |
| TCONS_00030051 | lncRNA | downstream | 978012 | 47337582 ~ 47338157 (+) | True | XLOC_014339 |
| TCONS_00028467 | lncRNA | downstream | 1061490 | 47421060 ~ 47423627 (+) | True | XLOC_014340 |
| TCONS_00030052 | lncRNA | downstream | 1078634 | 47438204 ~ 47448594 (+) | True | XLOC_014341 |
| TCONS_00028452 | mRNA | upstream | 9582 | 46309553 ~ 46333810 (+) | True | XLOC_014328 |
| TCONS_00028451 | mRNA | upstream | 39770 | 46259619 ~ 46303622 (+) | True | XLOC_014327 |
| TCONS_00028449 | mRNA | upstream | 85512 | 46240171 ~ 46257880 (+) | False | XLOC_014327 |
| TCONS_00028448 | mRNA | upstream | 104768 | 46237665 ~ 46238624 (+) | True | XLOC_014326 |
| TCONS_00028447 | mRNA | upstream | 104770 | 46222918 ~ 46238622 (+) | False | XLOC_014326 |
| TCONS_00028455 | mRNA | downstream | 12545 | 46372115 ~ 46411358 (+) | True | XLOC_014330 |
| TCONS_00028456 | mRNA | downstream | 465153 | 46824723 ~ 46825683 (+) | True | XLOC_014332 |
| TCONS_00028457 | mRNA | downstream | 776107 | 47135677 ~ 47137425 (+) | True | XLOC_014333 |
| TCONS_00028458 | mRNA | downstream | 930717 | 47290287 ~ 47298657 (+) | True | XLOC_014335 |
| TCONS_00028460 | mRNA | downstream | 939642 | 47299212 ~ 47309226 (+) | False | XLOC_014336 |
| TCONS_00028450 | other | upstream | 62461 | 46243620 ~ 46280931 (+) | False | XLOC_014327 |
| TCONS_00028436 | other | upstream | 834411 | 45508865 ~ 45508981 (+) | True | XLOC_014316 |
| TCONS_00028433 | other | upstream | 2311228 | 44009473 ~ 44032164 (+) | False | XLOC_014312 |
| TCONS_00028411 | other | upstream | 2677881 | 43665391 ~ 43665511 (+) | True | XLOC_014295 |
| TCONS_00028401 | other | upstream | 2891445 | 43439401 ~ 43451947 (+) | False | XLOC_014288 |
| TCONS_00028459 | other | downstream | 939596 | 47299166 ~ 47309383 (+) | False | XLOC_014336 |
| TCONS_00028462 | other | downstream | 947053 | 47306623 ~ 47306738 (+) | True | XLOC_014337 |
| TCONS_00028470 | other | downstream | 1215045 | 47574615 ~ 47574823 (+) | True | XLOC_014344 |
| TCONS_00028474 | other | downstream | 1658436 | 48018006 ~ 48018346 (+) | True | XLOC_014351 |
| TCONS_00028479 | other | downstream | 1659236 | 48018806 ~ 48023408 (+) | False | XLOC_014352 |
