RNA id: TU205184


Basic Information

Item Value
RNA id TU205184
length 539
RNA type TUCP
GC content 0.41
exon number 2
gene id G180716
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 72110968 ~ 72111663 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaggactaagattgaatcgtactacactggctccgacgctcgtcggatgtggcagggcctgcaaacaattactgactacaaagggaagcacagccgagagctgcccagagacatgagcctaccagacgagctaaactacgtctatactcgcttcgaggcaagcactgaaacatgcatgagagcatcagctgttccggacgactgtgtgatcactctctctgcagccgatgtgagtaagacctttaaccaggccaacattcacaaggccgcagggccagacatattaccaggacgtgtcttcactgacattttcaacatgtccctgattgagtctgtaatgccaacatgtttcaagcagaccaccatagtccctgtgtccaagaacactaaggcaacctgcctaaatgactacagaccggTAGCACTCACATTGGTaaccataaagtgctttgaaaggctggtcatggctcactttaacaccattatcccagaaacctcaaagctcatcactaagctaaggaccctggtactaaacacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205171 lncRNA downstream 11083 72099119 ~ 72099885 (-) True G180706
TU205156 lncRNA downstream 32543 72078110 ~ 72078425 (-) True G180693
TU205155 lncRNA downstream 33407 72077352 ~ 72077561 (-) True G180692
TU205148 lncRNA downstream 41938 72068666 ~ 72069030 (-) True G180688
TU205135 lncRNA downstream 52075 72058478 ~ 72058893 (-) True G180680
TU205275 lncRNA upstream 134851 72246514 ~ 72246777 (-) True G180803
TU205299 lncRNA upstream 147186 72258849 ~ 72259049 (-) True G180827
TU205318 lncRNA upstream 159731 72271394 ~ 72271691 (-) True G180846
TU205346 lncRNA upstream 182067 72293730 ~ 72294015 (-) True G180874
TU205370 lncRNA upstream 201748 72313411 ~ 72314173 (-) True G180897
XM_036990293.1 mRNA downstream 20185 72070481 ~ 72090783 (-) False LOC100135856
NM_001124241.2 mRNA downstream 20289 72071209 ~ 72090679 (-) True LOC100135856
XM_021570908.2 mRNA downstream 60783 72012258 ~ 72050185 (-) False LOC110495580
XM_021570929.2 mRNA downstream 60783 72012258 ~ 72050185 (-) False LOC110495580
XR_005037756.1 mRNA downstream 60783 72017882 ~ 72050185 (-) False LOC110495580
XR_005037757.1 mRNA upstream 188669 72300332 ~ 72309971 (-) True LOC118941485
XM_036954961.1 mRNA upstream 345203 72456866 ~ 72532821 (-) False roraa
XM_036954955.1 mRNA upstream 345203 72456866 ~ 72744512 (-) True roraa
XR_005034538.1 mRNA upstream 662401 72774064 ~ 72775649 (-) True LOC118937294
XM_021570993.2 mRNA upstream 760308 72871971 ~ 72873771 (-) False c2cd4a
TU204130 other downstream 635989 71474372 ~ 71474979 (-) True G179754
TU203749 other downstream 968784 71134534 ~ 71142184 (-) True LOC110495479
TU203649 other downstream 1040764 71034735 ~ 71070204 (-) True G179310
TU203653 other downstream 1075754 70998045 ~ 71035214 (-) False G179310
TU203594 other downstream 1166207 70926690 ~ 70944761 (-) False ttc23
TU206204 other upstream 761081 72872744 ~ 72873745 (-) True c2cd4a
TU207073 other upstream 915721 73027384 ~ 73066724 (-) False G182494
TU207071 other upstream 944579 73056242 ~ 73061313 (-) False G182494
TU207075 other upstream 964364 73076027 ~ 73078379 (-) True LOC110495704
TU207306 other upstream 1233287 73344950 ~ 73345847 (-) True G182708

Expression Profile