RNA id: TU205420


Basic Information

Item Value
RNA id TU205420
length 1462
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G180945
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 72349845 ~ 72351306 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaggaggaatgggccaaaattctcccaacttattgtgggaagcttgccgaaggctacccaaaacgtttgaccaaagttaaacaatttaaaagcaatactaccaattactaattgagtggatgtagacttctgacccactgggaatgtgatgaaagaaataaaagctgaaataaatcattctctctagtattattctgacatttcacattcttaaaataaagctgtgatcctaactgacctaagacatggagtttttactaggattaaatgtcaggaattgtgtaaaactgagtttaaatgtatttggctaagttgtatgtaaacttccgacttcaactgtgttttCAAAGAAGCATGGATCATTGTTTGGAATGTATATATTAATGAGCCCCCTCCCCTCTTTTAATTATTTTCTTTGTTGGACATAATTGACTGATTTTAATGTAGGAAACCTGTTCCCAAGTAGTAGAGAGGCATATGTGATCATATCCCACTGAaatcaaggtttaaaaatcccaATGTATTCAAGGTTTGAAAAAGttctgtttttgtcaaatactatATCTGTGTGTGATtattgcggtcaatttgcagtgtacaaattgcTTAGAACTATGTGCCGGCCCCCCAACCTGCTCAAGGAAAAATCGACACACGGCTGAATGTAATTGGTGAACCCTGGTTTAAATCATAAGACGCTTATCTGCATATTACTTCAAACAATAGTTCTCCCGTGGAGTTGTCTTTTGACTTGTCCAGGAAACATGGTTTTTCATTTAATAGAGGCATAATAACCAAGCATACCAGGAAAAACTATTTTCCATGGATATATCCATTTCGTTAAGATGTGCCGAGGAGGAAGCCTATAAATGAATTCCTCTTGGTTCAAGTTAAGTTAATCTTGCAGGCAGACATTACATATGGACATGGAACATCATAAATGTAAATGGATGCAAATTCAGCTCGAGGACATCTAGATGCTCAATGTGTGGACTCCATGGGTGGCTTCATTATAGTTTTCATTGTGCAATGTGAAGAGCAGCTTTATGTGAATTCAAAAATATTGCCATTTTCCTCTATGATGATTTGAATGTTGTGGTCCAGTATATATTGTATTCCACCCTAATAGCCTTTATAATTGAAGTGGTTGGGCATAGTGAAGTGTGATTGTACCTTACAATATGTATAGTCTTGGTTGGTTCTTTGGGGATGTGTTATTTGTGGAAGTTATGTCCAGTGCCACAGGAAAATCACTGCATAGTGTGTTTGAAGATGACCAAACTGTAAAatgtgattggttggttggtttatTTGTTTTGTCATCCAAAAAAATAGtatattatgttgttgttgtgtaataCATTGATGGCCACATTCAGTAGATGTTACAGTAGAAGACAAACAGATACTTTAATATTGGATTTACTGGTACCAGAAAATGTTGCAGAAAACCCCAGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205418 lncRNA upstream 1170 72348311 ~ 72348675 (+) True G180943
TU205376 lncRNA upstream 26335 72323230 ~ 72323510 (+) True G180903
TU205375 lncRNA upstream 27064 72322543 ~ 72322781 (+) True G180902
TU205374 lncRNA upstream 27697 72321926 ~ 72322148 (+) True G180901
TU205368 lncRNA upstream 33860 72315677 ~ 72315985 (+) True G180895
TU205469 lncRNA downstream 27832 72379138 ~ 72379344 (+) True G180986
TU205472 lncRNA downstream 29371 72380677 ~ 72380890 (+) True G180989
TU205507 lncRNA downstream 55645 72406951 ~ 72407308 (+) True G181024
TU205496 lncRNA downstream 82551 72433857 ~ 72441882 (+) True G181013
TU205523 lncRNA downstream 105574 72456880 ~ 72463212 (+) True G181040
XM_021570969.2 mRNA upstream 6489 72336802 ~ 72343356 (+) True LOC110495632
XM_021618405.2 mRNA upstream 96036 72250884 ~ 72253809 (+) False LOC110533853
XR_002469455.2 mRNA upstream 284646 72059856 ~ 72065199 (+) False LOC110495604
XM_021570893.2 mRNA upstream 341582 71995694 ~ 72008263 (+) True LOC110495562
XR_005034536.1 mRNA upstream 367024 71961719 ~ 71982821 (+) True LOC118937292
XM_036954987.1 mRNA downstream 537011 72888317 ~ 73030225 (+) False tln2b
XM_036954991.1 mRNA downstream 537011 72888317 ~ 73030225 (+) True tln2b
XM_021571018.2 mRNA downstream 704822 73056128 ~ 73066027 (+) False LOC110495666
XM_021571037.2 mRNA downstream 704822 73056128 ~ 73069598 (+) False LOC110495666
XM_021571054.2 mRNA downstream 704953 73056259 ~ 73064636 (+) False LOC110495666
TU205289 other upstream 96118 72253438 ~ 72253727 (+) True LOC110533853
TU204899 other upstream 284650 72059717 ~ 72065195 (+) False LOC110495604
TU204900 other upstream 284650 72059717 ~ 72065195 (+) True LOC110495604
TU203144 other upstream 1541941 70795410 ~ 70807904 (+) True igf1ra
TU201991 other upstream 2236405 70107286 ~ 70113440 (+) False G177812
TU206530 other downstream 990074 73341380 ~ 73342277 (+) False G181995
TU206531 other downstream 990401 73341707 ~ 73342277 (+) True G181995
TU206574 other downstream 1225459 73576765 ~ 73580075 (+) True LOC110501876
TU206683 other downstream 1255586 73606892 ~ 73610237 (+) True G182139
TU206688 other downstream 1271230 73622536 ~ 73624518 (+) True G182144

Expression Profile