RNA id: TCONS_00030050


Basic Information

Item Value
RNA id TCONS_00030050
length 2079
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_014334
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 47188530 ~ 47191501 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGTGTTGTTTTAACTTACAGGTACAATACTGTCTGCTTTTGtacaactaaacaaaaaaaaagaaaagaaacaaaagaatttaccatttcattctgctgtgcgAACACAAAACCGCGACTCGGGCCGgtctgccgtctagagccacagACATCTGCACGCTTCCAAATGGTAGGCACTTTTAAGGCAAggtttaaaacatttgtgaatatacatttatatataattctaTATAGATTTCCCCATACATGAATAAGTAATCGGATGCGAAGGTCAGATGTCTACTCAATAAAACCAAACTAACAGCTAACAATCAAAGAAAACAACCAATAAAACAGAACCTTGACTGTGGCCGAAGGATTACGCAGCAATAATGTGAAAATCAAACGAGTctttggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggccagaAAGCTCACTTCAGTCGACAGACCGAGTTTAATCTAATTATAccggttttaaaaatgtttagagtCGCCAAACTGGCCGATCAGCCTCATTTCAGCTCTTTCACACCATTCCAAACTCGTCCACCGCTGGAAAACGAGCTCAGAAATAAGAAATTCaatgttttttcccccaattggGACGCTACGATGTAAAAGAATATCCATAATGAGCAGTTTTCTCTATTTGGCGATTCCTATTTTCATGTTTCCTCGTTTAGTTTTGCTTTTGCATTGTAgtatgggatcttgatctctcCTCCTGCAACTTTTCAtcttaaaaatatcaaaataaggacttttattgtcattattaatattctgcagtgctgtattgtcttGACTATATTAACACTACAAACACCCTGAAGTAAACttccagcacattttctgttcttCTACACACTTATTCCTCTATTTCTTATACTTTGTATGATTATAGCTCCTCCAtcaacaaacaccttgtaatgacctgcagcagattttctgttattttacacacctATTCCTCCAAAtattacacattatattatttaaagctactaaaatgtcaataaaagtcactttgttcaactgtagagttgaattctcaacatcagaagtggacagagcagagatcaacatcccataatgcaattcaccactgCAAATAAACCCAATAAACACACTAAATATGGATATTGCTAATCAGCAGTGTGGATAGTTTGGGCCGCTTAACAGTACAGATCAGCTCTACTTTCTGCAGGAGCTCATAAAACAGAtcaccggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgatcTTTTCATCCATGATCAAAGCAAACGCAATACGGGGCTCCAGAAATCAGCCTGGGTTTCTTCATCTAACAGACGAGAGCTGCTGATCTATGCGAGGTTTTAAATGGCACTGCTTGATTTATTTGACCTACAAACACTGGCGAACGCAACGCACGGGTCTTTAAACAGATTATCAGCTCTGAGCACCAACAAAACTCATAAACTGAGCGGGGAAACATTGAGACATTGGCTTGGGAAAACTACAGAAAGgcaattttttttgttcaacatcTGAGATAATGATAAATTAATGAAACACTTTGATGATGAGCAACCATCAGACATGCTGGGAACCTAAATAAATGAGCCGAAATCAAAATCAGGATGATGAGAAATGAAATCAGGACTGATACAGAACAATTATACGCAATTATTCCACTTTAAAATGTCGTCTTTACAAATACATACTGCTACAGTTAAAAAGTAGTCAGCGACTAAAAACAGCTGCTTTGACAGAAGACGGATGCAGAAATCCTCAGCTTTACACATCTGCTCCTTTCTTTCTCAGCCGTTTCGATACACGTTTAAATACAGAGAGATTTTGCTTGCGCTCTTGTTTGTTTTCGTcataaaaaaagaggaaagaaaaGGTCTTAATTACAATACTCTATGCCAAAAGCTTTccttaatgttatttattttttcctcaatcaTTTCTTTTAATAATGCAGAAGGAGTTTGTCGTAGTCACTGATATTGAAGTCATTTTATGCGTAAAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0022604 regulation of cell morphogenesis biological_process
GO:0007508 larval heart development biological_process
GO:0006935 chemotaxis biological_process
GO:0030154 cell differentiation biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0090596 sensory organ morphogenesis biological_process
GO:0030182 neuron differentiation biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0120035 regulation of plasma membrane bounded cell projection organization biological_process
GO:0120036 plasma membrane bounded cell projection organization biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0031344 regulation of cell projection organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0031346 positive regulation of cell projection organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0010769 regulation of cell morphogenesis involved in differentiation biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0097485 neuron projection guidance biological_process
GO:0061564 axon development biological_process
GO:0002164 larval development biological_process
GO:0030030 cell projection organization biological_process
GO:0048666 neuron development biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0008038 neuron recognition biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0060284 regulation of cell development biological_process
GO:0042330 taxis biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0031175 neuron projection development biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030049 lncRNA upstream 750395 46423091 ~ 46438135 (+) True XLOC_014331
TCONS_00030048 lncRNA upstream 907599 46240507 ~ 46280931 (+) False XLOC_014327
TCONS_00029735 lncRNA upstream 969490 46216335 ~ 46219040 (+) False XLOC_014325
TCONS_00029736 lncRNA upstream 969490 46217109 ~ 46219040 (+) True XLOC_014325
TCONS_00028445 lncRNA upstream 1016212 46158142 ~ 46172318 (+) True XLOC_014324
TCONS_00030051 lncRNA downstream 146081 47337582 ~ 47338157 (+) True XLOC_014339
TCONS_00028467 lncRNA downstream 229559 47421060 ~ 47423627 (+) True XLOC_014340
TCONS_00030052 lncRNA downstream 246703 47438204 ~ 47448594 (+) True XLOC_014341
TCONS_00029737 lncRNA downstream 398528 47590029 ~ 47591236 (+) True XLOC_014345
TCONS_00029738 lncRNA downstream 591591 47783092 ~ 47784972 (+) False XLOC_014346
TCONS_00028457 mRNA upstream 51105 47135677 ~ 47137425 (+) True XLOC_014333
TCONS_00028456 mRNA upstream 362847 46824723 ~ 46825683 (+) True XLOC_014332
TCONS_00028455 mRNA upstream 777172 46372115 ~ 46411358 (+) True XLOC_014330
TCONS_00028453 mRNA upstream 826298 46343385 ~ 46362232 (+) False XLOC_014329
TCONS_00028454 mRNA upstream 828960 46343392 ~ 46359570 (+) True XLOC_014329
TCONS_00028458 mRNA downstream 98786 47290287 ~ 47298657 (+) True XLOC_014335
TCONS_00028460 mRNA downstream 107711 47299212 ~ 47309226 (+) False XLOC_014336
TCONS_00028461 mRNA downstream 110392 47301893 ~ 47309226 (+) True XLOC_014336
TCONS_00028463 mRNA downstream 119519 47311020 ~ 47336002 (+) False XLOC_014338
TCONS_00028464 mRNA downstream 120368 47311869 ~ 47336408 (+) True XLOC_014338
TCONS_00028450 other upstream 907599 46243620 ~ 46280931 (+) False XLOC_014327
TCONS_00028436 other upstream 1679549 45508865 ~ 45508981 (+) True XLOC_014316
TCONS_00028433 other upstream 3156366 44009473 ~ 44032164 (+) False XLOC_014312
TCONS_00028411 other upstream 3523019 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028401 other upstream 3736583 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028459 other downstream 107665 47299166 ~ 47309383 (+) False XLOC_014336
TCONS_00028462 other downstream 115122 47306623 ~ 47306738 (+) True XLOC_014337
TCONS_00028470 other downstream 383114 47574615 ~ 47574823 (+) True XLOC_014344
TCONS_00028474 other downstream 826505 48018006 ~ 48018346 (+) True XLOC_014351
TCONS_00028479 other downstream 827305 48018806 ~ 48023408 (+) False XLOC_014352

Expression Profile

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