RNA id: TU206023



Basic Information


Item Value
RNA id TU206023
length 226
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G181520
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 72752264 ~ 72752489 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctctctctctctctctctctctctctctctctctgtgtgtgactgtgtggttggagacaggtgtgcgggagtcagagcagatccctaccagctgcaactcgttccataatcaagacctctacaaatactcagtcctgccacttccactctaCCACATTGTAATCTATGCTCAGTCAGTTCATGATTCTAGCCATTTATGATTATTCAAGATCCTGATACTCTGCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU206018 lncRNA downstream 2399 72749634 ~ 72749865 (-) True G181515
TU205747 lncRNA downstream 303728 72423136 ~ 72448536 (-) True G181257
TU205741 lncRNA downstream 339078 72412929 ~ 72413186 (-) True G181251
TU205737 lncRNA downstream 343331 72408733 ~ 72408933 (-) True G181247
TU205736 lncRNA downstream 344146 72407666 ~ 72408118 (-) True G181246
TU206032 lncRNA upstream 4959 72757448 ~ 72757706 (-) True G181529
TU206047 lncRNA upstream 10981 72763470 ~ 72763677 (-) True G181544
TU206048 lncRNA upstream 11704 72764193 ~ 72764403 (-) True G181545
TU206178 lncRNA upstream 80803 72833292 ~ 72877678 (-) False c2cd4a
TU206997 lncRNA upstream 173236 72925725 ~ 72928284 (-) False G182443
XM_036954955.1 mRNA downstream 7752 72456866 ~ 72744512 (-) True roraa
XM_036954961.1 mRNA downstream 219443 72456866 ~ 72532821 (-) False roraa
XR_005037757.1 mRNA downstream 442293 72300332 ~ 72309971 (-) True LOC118941485
XM_021570960.2 mRNA downstream 576817 72107576 ~ 72175447 (-) True LOC110495618
XM_021570953.2 mRNA downstream 577338 72106006 ~ 72174926 (-) False LOC110495618
XR_005034538.1 mRNA upstream 21575 72774064 ~ 72775649 (-) True LOC118937294
XM_021570993.2 mRNA upstream 119482 72871971 ~ 72873771 (-) False c2cd4a
XM_036954980.1 mRNA upstream 119482 72871971 ~ 72877673 (-) False c2cd4a
XM_021571110.2 mRNA upstream 323531 73076020 ~ 73078083 (-) False LOC110495704
XM_021571107.2 mRNA upstream 323531 73076020 ~ 73078090 (-) False LOC110495704
TU205184 other downstream 640601 72110968 ~ 72111663 (-) True G180716
TU204130 other downstream 1277285 71474372 ~ 71474979 (-) True G179754
TU203749 other downstream 1610080 71134534 ~ 71142184 (-) True LOC110495479
TU203649 other downstream 1682060 71034735 ~ 71070204 (-) True G179310
TU203653 other downstream 1717050 70998045 ~ 71035214 (-) False G179310
TU206204 other upstream 120255 72872744 ~ 72873745 (-) True c2cd4a
TU207073 other upstream 274895 73027384 ~ 73066724 (-) False G182494
TU207071 other upstream 303753 73056242 ~ 73061313 (-) False G182494
TU207075 other upstream 323538 73076027 ~ 73078379 (-) True LOC110495704
TU207306 other upstream 592461 73344950 ~ 73345847 (-) True G182708

Expression Profile