RNA id: TCONS_00028458


Basic Information

Item Value
RNA id TCONS_00028458
length 947
RNA type mRNA
GC content 0.43
exon number 9
gene id XLOC_014335
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 47290287 ~ 47298657 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAAATTCTTCCTGTTATGAAAGCGAAGTCAGTCGGCGGACAGTGAACTTTACAACCATTGGGAGATGTCAGCGCAGGCCGACCGGGTGATGGATCTGTCCGAGTGGGAGAACCGCTGGCAGGAAGGAAGAACCGGTTTCCACAGATCTGATGTGCACAATTTGCTGAAAGCTAATGTGGACAAACTCATATGTGGACGACGGGAGGTTCGGTTCTTCTTCCCGCTTTGTGGAAAGGCTGTAGATATGAAATGGCTGGCTGATTTGGGGCACACGGTTGTTGGAGTTGAATTTTCGGAAAAAGGAATTAAAGAGTTTTTTCAAGAGCAAAATCTGGAGTATAATGAAGAAGCTGTGGCAGATATTCCTGGAGCAAAGCTTTTCAAGAGCACAGATGGGAAGATCTCCATCTATCAGTGTGATTTATACAAGTTCTCCAGTGCTGTTGCGGGACACTTTGGAGGGATCTGGGATCGAGGAGCACTGGTGGCTATAAACCCATGTGATCGGCAAAAGTATGCGAGTCTGCTTGTGTCTTTAATGAGCAGCGACTGCAGATATCTGCTGGACACGCTGGAATATAACCCTGAGCTTTATAAAGGTCCACCATTCTTTGTGTCAGAAGACGACATAAAAACTGTATTCGGAGGAAGCTGTAATATTGATCTTCTGCAGAGTGTGGATGGTTTCGAGGAGAAGCACAGATCATGGGGACTGGATTCACTCACAGAGAAACTTTACCTGCTCACTACTAAAACTTAGTAATCATCACCAGACCAGACCAGCGTTACAAACTCATCACTTGACAACAGCAACAAATGCATAAGGGACTCACAAATAAGGATGCAGAAAAGATGCAATTATTTTCCAattttaataacagatttttgctattttaatattTGGACATTATTGTacaataattgaataaattgttatattttgaga

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008119 thiopurine S-methyltransferase activity molecular_function
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-141 Predicted to enable thiopurine S-methyltransferase activity. Predicted to act upstream of or within methylation. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia; alopecia; leukopenia; and thiopurine S-methyltransferase deficiency. Orthologous to human TPMT (thiopurine S-methyltransferase).

Ensembl:

ensembl_id ENSDART00000078382

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030050 lncRNA upstream 98786 47188530 ~ 47191501 (+) True XLOC_014334
TCONS_00030049 lncRNA upstream 852152 46423091 ~ 46438135 (+) True XLOC_014331
TCONS_00030048 lncRNA upstream 1009356 46240507 ~ 46280931 (+) False XLOC_014327
TCONS_00029735 lncRNA upstream 1071247 46216335 ~ 46219040 (+) False XLOC_014325
TCONS_00029736 lncRNA upstream 1071247 46217109 ~ 46219040 (+) True XLOC_014325
TCONS_00030051 lncRNA downstream 38925 47337582 ~ 47338157 (+) True XLOC_014339
TCONS_00028467 lncRNA downstream 122403 47421060 ~ 47423627 (+) True XLOC_014340
TCONS_00030052 lncRNA downstream 139547 47438204 ~ 47448594 (+) True XLOC_014341
TCONS_00029737 lncRNA downstream 291372 47590029 ~ 47591236 (+) True XLOC_014345
TCONS_00029738 lncRNA downstream 484435 47783092 ~ 47784972 (+) False XLOC_014346
TCONS_00028457 mRNA upstream 152862 47135677 ~ 47137425 (+) True XLOC_014333
TCONS_00028456 mRNA upstream 464604 46824723 ~ 46825683 (+) True XLOC_014332
TCONS_00028455 mRNA upstream 878929 46372115 ~ 46411358 (+) True XLOC_014330
TCONS_00028453 mRNA upstream 928055 46343385 ~ 46362232 (+) False XLOC_014329
TCONS_00028454 mRNA upstream 930717 46343392 ~ 46359570 (+) True XLOC_014329
TCONS_00028460 mRNA downstream 555 47299212 ~ 47309226 (+) False XLOC_014336
TCONS_00028461 mRNA downstream 3236 47301893 ~ 47309226 (+) True XLOC_014336
TCONS_00028463 mRNA downstream 12363 47311020 ~ 47336002 (+) False XLOC_014338
TCONS_00028464 mRNA downstream 13212 47311869 ~ 47336408 (+) True XLOC_014338
TCONS_00028465 mRNA downstream 95613 47394270 ~ 47423628 (+) False XLOC_014340
TCONS_00028450 other upstream 1009356 46243620 ~ 46280931 (+) False XLOC_014327
TCONS_00028436 other upstream 1781306 45508865 ~ 45508981 (+) True XLOC_014316
TCONS_00028433 other upstream 3258123 44009473 ~ 44032164 (+) False XLOC_014312
TCONS_00028411 other upstream 3624776 43665391 ~ 43665511 (+) True XLOC_014295
TCONS_00028401 other upstream 3838340 43439401 ~ 43451947 (+) False XLOC_014288
TCONS_00028459 other downstream 509 47299166 ~ 47309383 (+) False XLOC_014336
TCONS_00028462 other downstream 7966 47306623 ~ 47306738 (+) True XLOC_014337
TCONS_00028470 other downstream 275958 47574615 ~ 47574823 (+) True XLOC_014344
TCONS_00028474 other downstream 719349 48018006 ~ 48018346 (+) True XLOC_014351
TCONS_00028479 other downstream 720149 48018806 ~ 48023408 (+) False XLOC_014352

Expression Profile

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