RNA id: TU207055


Basic Information

Item Value
RNA id TU207055
length 4971
lncRNA type read_through
GC content 0.32
exon number 3
gene id G182494
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73011478 ~ 73066724 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTAAAGGCCTTAACAACTACAGTAAGGGGGCAAGAGAAACTCAGTCTAGTCTATGGTCTAACACCCTATCCACCATAAATATATACCTCTCGGACTCATCAGCCGCCTTCTCAGCCTCCTCCAGCTTGGTCAGGGCAGTTGCCAGACGCTCCTGAGCACGATCCAACTCCTCCTCAACTAGCTGGATACGTCTGTTAAGGGAAGCGACATCGGCCTCAGcctaggagagaagagaagaactTGCCAGAACCTGCATCGTGGGGTAAAATGCATTAagacaaacatacagtacaaacATATCAACATAAAGAATACTGGTGAATTTTCCACCTCAGTGTCTTGTGTGTTTTATAGGTGAGAGGTCTGGGTAATGACTATTTAAAAAGTGCCATCTCCATCTGCCAGCCTAATGACAGTGTCACCTGTTGGGGAGAGAAAAGGGCCTTCCTAGGAGGATTCCCCTGTGCTGAGCAGCACTCCACACACTGTGTAATGACAACAATGCTCCTGGCTGACACAGGCTGAATACCTGGCCTCATTATTGGACCCCAGAGGTGACATTAACGAGGACTCATGGTGCACCAAAGTGGTTTACACTGTcaaaggccacacacacacacacacacaccaatgaagAGTCCCCAGAGGACCATATCTGAAGATTAGATGATGTTCAGCCTTTCATCCTCTCAAAATGTCTactttattgttattttactggtgGTGTGACTGATCAAGTGTATTCCCTTCTGTTCTAATTACCTTACCACTAGTACCAACAATAAGTTACGGAACCGTCACACTATTTTATAAGAGATTTTATACTGAGGAAGTGTCaaattcagctagaaatatgttTTTGTGGTAATAAAACAGAACATTTGATAGCAGAAACAATTGATATGGACAGCCACTGCTCTATTCTTtgtttctatatctatatctctaaGTCGACTTATTTTGAATCTTTAAAAACACTTCAATCCCTTTTTGACAGCAGCCCATTTGAATTGAATGAAACCTCCCACATACATATTGGCCCATTgcagaagtggtcagaaagtgagTTTTTGGActtgaatgccaaaacattcaagagataaaggtgctcaaagttgacctattttgcataccccaccatactaTGGTTAACCGCTCAGAGGCCTGATCACATACTAACACCAGAGTGGTGCGCAGGGTCCATCTCATGTTGTGAATGGCGATATGGAAACTAGCCAGTGAAATTAAGATGACTATCAGTTCATCTAGTGGTTTTTCAAACCCCACCCAAAACGTCTCCTTCAAATAAACTAACATGAAGTGACCATGTTGATGTTGGCAATTAACCTGCTTAGCAGCAAATTCATACAGGCTTTATTTCCTGATTCTATAGCTCAGAGGCTGGCCCCCTGTTCTTTAGAACATGCGACAACTATTTGTCCTTATAAGGAAACCTTGTTTAAAACGACATTCTGCTATTGATGTTGTTCGCAGCTCTGTTGCAACATTCTCTGACGTTATTTCCTGTTTAAATGGAAAATAGTTTACTCTGTGCtgcaattatgtttttttttaaaaaagtaCAATTTACTTTAGGTTATTATGTGCACTAAAGCATGTGCATAGAAGCCTAGCATACCCAAGAGATGAATATTGGGGGTGATACAGTACCATTAAACAAACTAATATTTCAATCAAATAACTGTTTGTGAAAACAGTTACCTTTGTACATCATGGCCATCAATTAAGAGAAAATATAAACGGACTATGACATCAGAAACATGGTGGTTACAGTATCATTGAAATCGCGCTCTACCGCTACAGCTAAACACTATTTACACTTGGGGCAATCATCAAATTCGCCTCGAGCTCGTAATCTGTCCGAGTAGGCGAATCGTAATCAATGAGCATGATACATTTAGGTTGTTAGCTAACACAAcgggatcaaatcaaatgtatttatatagcccttcttacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcactgcaggtgtagaagcacagatGTCAGAGAAATTCCGCTATGTCAGTGCATCACCATGGATTTTTAAAGTCTGTGCTACTCACTCGGATATTAAACTTCTCAAAATAAATATATCATTGTTtcacttttggagaaatgtttgttttttttgcagtTATTTTATGATATGCTTACGGATTCTCTGGTTTTCCTCTCCAAGCCCAATTCTCTCTGTAGTCTTTCAGCTCTCTCTTCAGCACCGTCTGCCTGCTGTTGCAGGGTTTTTATTTTCCGTTTAACGGCCTCCAGTGATGTTATACCGGTCATTATTTCAACTTGCTAAGAAAACTACGTTAACACTTTCCTTGAAATGGAAACGGAGCGCTACAACGCCCTGGAATGTACCTGGAGGGAGGCTGCCCGCGGTACTCGAGTCGTTTGTGAGGAGCGCACACAGCAATAACTGAACGTTAACACCGGAAGTAACCATGCTTTCATAACCTTTTCAAGGCTACAAACGAAAATATACGGGAAGTATAATTTATTTTTAGTTTCTTGTTGTCGTAATATTATAATGGTTAACCAACATTTGGTCATAATAAAAAGTGTATCTGTGGTAGACGTACTGTAATGATAAGGGCACGCCCAGCTACTACAAGCGTTGACTAAGGGACCTTGCACGGGTGTATAGCACCATCTGCTGGTATTATCTAGACAGTACACATGGGATTGAAAAGATATTCAGAATGTATAATTCCTAAAGAGTACCAAGAGGCCTTCTATGCATTTGTAGAATTTTACTCAAGGAGGTCAACAAATTCGTTTTTTCCTGAACTCCTTTCCTGCAATAGTTAAGTTAACTTGCCTTGCTAATGTTTTTCCATATTTATTTAGCCTAGGATTATCATGCCATAACACGACAAACCTAGGTATTTTATACATGTTGTTTTCAGCCCCTGAATGCAGCTCCCGGTGTCATGCATGAAGCGACAGTTTTCCTTTTATGGAGCATTTCCCTAATTTCAAGTTCTTCCCTGCATGAAGCCAAATTATACCGCAGGGAAGCCAAATTACACTCTAGAGTATGAGTTTAACTAAATGTacctcaaaacaacaacaaagtacATTAATAATAAGATACAAGAATAATCTTAAATACCAATGGTCTAAAAGTGTATTTAATGAGTAAATATCTCATTATTAGAAAATACTTCAGGTTGATGGTAGAATAGTTAGACAATTAAATTTAAGGGAAACTAATTTACTATAGGCCTAGTCTGTTCTGTTGCAAGAAACAAGCGCAGCCCAAAAAGTAAGCTCTAACTTGACCAATGACCAAATAAAGCAGTGGGCTATATTTATCCGTGCGGTGCACACGCACTCTGCTTGGAGACTGCACGTTTAACAAATTCAGTTTCCACTCGTAAATGTCCCCACTTTAAGGAGCTGTGGAGAGGAATCTGATTTAGTGTCTTAAATTGACATTGGGGTCTCATATGTAGGCGATCTATGTGGAGAGATTCAAATACCAGAACACTGAAACACCTTTGTTCTTTATATTGATATGATTTAGGTGATTTGTGATCTTTgacaacagacacacaaccaTAAAATATCTAAAATGACAGTTCAATAATATCTGGCATGACATCATGATTGTTTGTGATTTAAATATTATTCCTTTATCATAATAAGCTACAGTCCAGCTGGCCCATAGACATTTAGGGCTGGACAGGTGCATCACACCTAAAAAGTATTCAACCTACATTTGGTCATCTGAAAAAAGACTTTAGACCGAGTGATGAGGCCGAATAAAGGCCTCTCACATAACTCTGTCATTTTACATATTTTACAGTTTGATGTGAAACCGATTTGGGAAGCAGTGTGCAGGAATGGTGATTTTGTGCCCTTTACTTACGTCCGTGGCTGTCTTCTCAGCCACCTCAAGTTTCTCCTGGGCATCCTTAAGAGACTCGGAGTACTTGTCCAACTCATCCTCTGTTCCCTTCAGTTTCTTTTGCAGAGCTACCAAGTCATCCTCGAGCTGAGGTTTGTTTTAGTGTGGACAGTTTCACAGGGGTGATCAGCGGGAAACAGAGGGCGTGAGCGCGCACAAGGCGCAAgaacgcagacagacagagaaagggagaaagaggagagaagttAGGGAAAATCATGCGAACCACATAAAATACCTTGGTGGCCACCTCCTCGGCGTTCAGAAACTTTTCCTCGGCGGCTTGGAACTCATCAAGCACTTTATCACGTTCATCTTCGGTGATCCGTAATTTCTTTTCCAACTCACTTAtttcatcctctaactacacatGCAAAGGACAACATTTTATTTAGTTGAATAGAACATCAAAGTGAATATACTATTGCATTTATGCTGAAAGAAGCATACGTTTTTCAATAGCCTATCCATATTCCCTACAGTAATTATTCTATATTTCCTACTTATACTTAGCCTACAGTAATTTTCCTACACATGTATTTTCCTACTTTATAATTAGGCTACATTAATACAACTTCAGGTCACTTATTAGCCTACCCGTCGTGATATGTTATTCATAAATATCACTTAAATACTCCTTATTTCGAATGATCCGTAAAAGTGATACATCCACATCGAAGAGGTGATCGATCCACGTTTAGAGACTGCCGCGAACAGAGCCACTGGTATTCAGGTGCCTTTTCTAGAATCATTTAGATGTTCCATACATAATGCCGACCTGTTTGCTCTTGTCCTCTGCTGCCTTCTTGTCTCCCTCGGCTCCCTCAGCTCTGTCCAAGGCATTCTCCTTGTCGAGCTTGAGCATCTGCATCTTCTTCTTGATGGCATCCATGGCTGCTTATTTTTTGTTTGGCTCCACCAAATGTTTCGAAAGAGACCCGAGGAGAGAGACTGTGCGTCTGTGCTTCACTGAACGTTGCGCTGGAggagacagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207088 lncRNA downstream 7132 73003899 ~ 73004346 (-) True G182508
TU207048 lncRNA downstream 22438 72987164 ~ 72989040 (-) True G182487
TU206997 lncRNA downstream 83194 72925725 ~ 72928284 (-) False G182443
TU207002 lncRNA downstream 83194 72926337 ~ 72928284 (-) True G182443
TU207001 lncRNA downstream 84181 72926337 ~ 72927297 (-) False G182443
TU207067 lncRNA upstream 18 73061331 ~ 73066724 (-) True G182494
TU207135 lncRNA upstream 45732 73107045 ~ 73113341 (-) True G182552
TU207137 lncRNA upstream 45820 73107133 ~ 73113445 (-) True G182554
TU207136 lncRNA upstream 46162 73107475 ~ 73113880 (-) True G182553
TU207237 lncRNA upstream 171889 73233202 ~ 73265698 (-) True G182648
XM_036954980.1 mRNA downstream 133805 72871971 ~ 72877673 (-) False c2cd4a
XM_021570993.2 mRNA downstream 137707 72871971 ~ 72873771 (-) False c2cd4a
XR_005034538.1 mRNA downstream 235829 72774064 ~ 72775649 (-) True LOC118937294
XM_036954955.1 mRNA downstream 266966 72456866 ~ 72744512 (-) True roraa
XM_036954961.1 mRNA downstream 478657 72456866 ~ 72532821 (-) False roraa
XM_021571110.2 mRNA upstream 14707 73076020 ~ 73078083 (-) False LOC110495704
XM_021571107.2 mRNA upstream 14707 73076020 ~ 73078090 (-) False LOC110495704
XM_021571097.2 mRNA upstream 14707 73076020 ~ 73078109 (-) False LOC110495704
XM_021571138.2 mRNA upstream 84908 73146221 ~ 73157311 (-) True etfa
XM_021571186.2 mRNA upstream 115408 73176721 ~ 73272412 (-) False scaper
TU206204 other downstream 137733 72872744 ~ 72873745 (-) True c2cd4a
TU205184 other downstream 899815 72110968 ~ 72111663 (-) True G180716
TU204130 other downstream 1536499 71474372 ~ 71474979 (-) True G179754
TU203749 other downstream 1869294 71134534 ~ 71142184 (-) True LOC110495479
TU203649 other downstream 1941274 71034735 ~ 71070204 (-) True G179310
TU207075 other upstream 14714 73076027 ~ 73078379 (-) True LOC110495704
TU207306 other upstream 283637 73344950 ~ 73345847 (-) True G182708
TU207489 other upstream 614899 73676212 ~ 73676423 (-) True G182882
TU207716 other upstream 931765 73993078 ~ 73993545 (-) True G183096
TU208238 other upstream 1045570 74106883 ~ 74110791 (-) True G183538

Expression Profile