RNA id: TU207062


Basic Information

Item Value
RNA id TU207062
length 5698
lncRNA type antisense_over
GC content 0.43
exon number 5
gene id G182494
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73011478 ~ 73066724 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCATATCTATAAATTTATTTCAACAATAAAATGATATTGCAAATTGCAGACTTCATGTCATCAACATCAGCATCTCAATAGTCAATCTTACTACTCTTTCCAACTCACTTTCAACAGGCAAAGGCAGACAATCCTACATACTGTGCTTCTCTTCACGCCTACTACTTTCCCTACTCGTTCAATAGCAATCCAACATGTGCCAACTCCCTATCAAAACATTACATTAACTATACTGTATTGAGCCAAATGACAGTCGCCTTAAAAGCTACATTTGTTTTAACAACCGTATGTGCCATGATGCTCCTTAAAAAACATACCTTCATTAAGGCTGTAAGATAGGTACATACCTAAGGGAGTAGTGACTATTAAATGAGGGAAAGTTGAATAAGAGCTACAAGTGTATAGTAGGCCTAATTGCAAGAACTGTTCACTGGACAGTGCACATTTCGCCTCTCAAAATGAATGAAAATGTTAATCAACACCAATGGACATTAAAACAGAGGTACTTTCAACTGAACTTGTAAGAATGCCAGCACCATAACATTTGTTTATGGGTTCCTGagacattaaaaaaaacaatgacAACATTACTAACATCAGGGCTCCCTAGTTTTATTATTAGAGCCGCTTGAAAATAAATAGAAATGAAAATTAAATTCAGAAGGAACAGAAAAGGATAGAATAAGGAGATAAAGCTTACATAGAAGGAAGAAGGTTTATTTGTATACAACACAGAAAGATTCAGAGGTTCTATACAAGAGATGGGATACAACACTGACAGGATGAGAACATGGGGAGTAAAGGAAAGCATGGACAGAAGGGTTGGGAAATGGAAGAAAGGCCGGGAGAGAGCAGAGCGATGCTGCTCAGCTGGCGGGAGGCGTCTTTGATGAGGTGTAAACAATTTATCTGTGCGGAAGAGAAGAGGTACAGTGAGGTACTGCTATAGGGGGTTTGTTGGGAAACAGACGCGCAGCAACACATCAGCGCTACTGGCGCCACAGCACAAAGGACAGGCTAGAGCCACAATGCCCCACTGGGAGGTATTGCCATGGAGGGATACAGACAGTGTACGACAACTACTGCAGCAACCACCTCAAACACACCAAACCTCTGATCACATGAAAGACCTTTCCAAGGAGTCATGAGGAGCATCAGTTGACCAAACATCTGTCATACATGGTGCTCCACCTCCAGCTTTGACACATCTGATATATTCTCAGATGCCAAAGGGGCACAGCATAAAACCCAACAAAAAGACAACTTCCAAAGGCAACCAGACTGTAGATTGTGACAGTTTCCCCTCAACTGTGGTTATGAACATAAAGGAATTTCAAGGGGGACGCATAGGGCCTTTCTTCCATACAGAAGTAGACCTTGTTAGTAGTAAAAACAAGTGAGCTACACTTGGAAAATGTACAGAACACAAAAGCACACAGACTACATGGAGAAACTCAGTTTAAAAGACCAGAAGGCGGCTCACATTGAAATATTGCATTTCAATAGACACCTCACATGCATTAAGGGCTAACAAAATATTATGAATATTTTGAAATTAAGACATTAATTTGTTGGTCGAACAATGTACATTTAAAATACTATCACAAAATGAATTACGATTACTTTTGTGTAAAAAGTAATACATTATGGTAGTTATTAAAATGGAAGCCCAAATGGGTAAACAAAGAACCTCCATGCTGTATTCTGTTCATACAAAACAAGTCTAGGTTCAAGTACTCTACTGCACTGCTAAAAATGGTAACTGACTTTAATGGAGAGAATGTCCTCACAACCACAAACAAGTCTAAGTGAGAATGGAAACCATTGAGTGAGCTTAAAAAATTCCCACAGTTAGCCAGTACTTACGATATACAACCCCCTTTAACTATCCTTTGACGAAGACCTTTAGACTACCTAGTGTATAGACATAATTAGGTGCTTTCTAACAGTAATGTGAACCACTTTATCTTGTACGAACAGAAACAGATGGATTTCAGATAGACAGAAGATTGTGATGGCTGGACAATGGGGATGGGAGGTGCAAGGAGGTGACGACAGAGGCACAAGCAGGCAGCTCAGATGAAGAATTACATGGAAGTCATGTCGTTGAGGGCGTTGTCCAGCTCCTCGCTGATGGCCTTGTACTTCAGTTTCTGGGCATACAACTCATCTATTGGGACGTGGGCCAAGTGcacagacagggaggaggagggggaaaaggTGGAGGGGTGTGTGGGAAGGGTGGTGAAGGGCATCCGGGTCATCAGCAAGACCCCAGAGGGAGGTGGGTGAAACAGCCcagggagagtgacagagtggaaaaggaagaaaaaaaaagttatacCAGAAGAGGATAGAACAGAAATGTGATTGAAGTCGACAAATTCCTCAGCATCATCAAGAAATAGTGAACAGAGTCCTGAACATCTCATGTCAGAGATATCATGGCCATATGACTGTTTCTTCAGCCCTTCTAATTACTATGAGAGCCTCCTGCTACATTATTTAACCTATAGATGGAGGATTTACTGTAACAAGCAGTTGTAGGGCAGCATATCCCTACCATATCCCCCATACTGTGACTAATAGCTTATTCTCATTAAGCAGATGCAACTTAATTGTTGCAGATCAACCGGCAAAAACAACCCAACCTATGAACAAAGTGAATTTAGAGTGAATAGGATGACCTGTCAAATGTCCAACTACTAAAGTCATTTCCATTCAGATGTGACCCAAAAGTACACCGACTCAATCAGGGTCACGTGTTGCTCAGAATATAAATTTGATAATGGAAATTGTGAGAGGTAGCAAAGACCAGCACAGATTAGATTATATTGACAAGGTGTAGCATAGAAGGCAAGAGGGTTTCCTCCTCTTGTTCAAGACATTTTGAAAGAAGCATAGACACTTACCAAATGGCCATGAATGAGACTCACTGACACTATAAAATGTAGACCTACTccaaacagagcaaagtacagttTTGAAATGAACTGCAAAAAAGTCATACCTTCCAAGTCGTCGATGGTCTTCTCAAGTTTGGCTACTGATCTCTCAGCGAACTCAGCACGAGTCTCAGCTCCTTCAGCTTGTCAGTGAGGACCTTGATCTCCTCCTCGTACTTGTCCTCCTTCTGTGAGTACTGTAGATCAAAAGAAGCAGAAACAGGAGTCATGCATCTACCCAACTGTAACATCTGCACCAgtctacagagacagacagagcctaAAAACCCTCCCACTTTATCTTAAATATGAAACAAAAGACCTTACATCTAATGACTTATCAAACAGTTCTAAAAGAAACATAAGCAACAAGGCTTAGATGCAATAGGTTTATCTTCAATTAACAGAACAAATACTGAAAGGTAATTGCCTGACATCTTTAAGTACAACATTTTACTAATCTTATCCCTCTCCAATTTCATAAGCCAGATACTGTAACCAATGACCCAAGTGCTGCTGTAAATGGTTCTTCAAGTTCCTTCCATTCATTCTCCTGCATGGCTCTGGGGGGGATTTGAAAAGCATGCCTGGGTCTGAACACAGCGGCAGACTACCTACCTTCTCAGCCTGGGCCTCCAGTGACTTCAGGTTGTTGGTCACAGTTTTCAACTCTTCCTCAAGCTCAGAGCATTTGCTGTTGTTTTAGAGGGGAGAAGGTGCGGAGGAAGTGGAGGGTCCAGAGGAAATTGTGCCAAAATGGAGAGGCGTATTGAGACACCGATGACAAGTGGAAGcaggatggacagagggagagcaggaggggggaaaagaaacaaaacaaaataaatacgAACTAGGGGAATTACAGGAAGGAGACCAAAGTGCCTTAACACAGCAggaatgcaacaacaataaaggTGGAGACTACAAAGACACTTTTGTAAATGCCTTTTAGCTTACAGATTGGTCAAATTAAGAATGCTAATATGGCATTGTTCCTACCAGGTTAAAGGTGTAAAAGGCTCTAGTTCTAGGATATCCCGAGCATAAGCCCACACATAGGAAGAGAGCAAAGCAGAGCAAGGTGCTAGCAGGAAAGAGAGGCTTCATTCAGCAGAGTGAATGAACGTGACAAGAAGAAGTCGTACATAAGTATGTAAAGATAGACCTGACAGAATACTTTGTTAGTCTGCAGTACCTTTGCCTCGGAAGCTGTAAGTGATTTTAAGCTTTGTTTCAAAACTCTTAGCTCGTCCTCCGCTCTTCGAATCCGTCTGTTAGTGTATGTTGTGAACAAAAGGCCATTCAAAACATGAAACACATGCAAATTAATAGTACATGCAACAACGAGTGAGCAACACATCCAAAATAAAAAGTTAACTTTGAGCAAGGCGTGGCATTAAATAACCTCATCCATGCATGTTAATAATGTGCAGCGTCACTCCTAGGTGACAGTGAACAAAAATCTTACCCTTCTGAAAGCTCGGCGCGCTCTTCTGTACGTTCCAGATCACTCTCAATGATGACCAGCTTACGGGCAACCTTTAGGTGCAGAACACCAAGGAGTTACACTATACACAAAATGGCTGTGTATATACACCCAATATCTGTGTACATACACCCTATATGACAGGGTATGTCAGGGTGGACTTAATCATAGTGTGTGCCATTATGTTATTGTGTGGCCAACAGCAGCTGAGAGACTCACCTCCTCATATTTGCGGTCAGCCTCCTCAGCGATGTGCTTGGCCTCCTTCAGCTGGATATCCTGCAGCTCCATCTTCTCCTCATCCTTGGAGGCCCTGTTCTCAATGACCTTCATGCCTCCTCGGACTCATCAGCCGCCTTCTCAGCCTCCTCCAGCTTGGTCAGGGCAGTTGCCAGACGCTCCTGAGCACGATCCAACTCCTCCTCAACTAGCTGGATACGTCTGTTAAGGGAAGCGACATCGGCCTCACGTCCGTGGCTGTCTTCTCAGCCACCTCAAGTTTCTCCTGGGCATCCTTAAGAGACTCGGAGTACTTGTCCAACTCATCCTCTGTTCCCTTCAGTTTCTTTTGCAGAGCTACCAAGTCATCCTCGAGCTGCCTTCTTGTCTCCCTCGGCTCCCTCAGCTCTGTCCAAGGCATTCTCCTTGTCGAGCTTGAGCATCTGCATCTTCTTCTTGATGGCATCCATGGCTGCTTATTTTTTGTTTGGCTCCACCAAATGTTTCGAAAGAGACCCGAGGAGAGAGACTGTGCGTCTGTGCTTCACTGAACGTTGCGCTGGAGTGCAAGCTCTTCTTGAATGTGCCTTTTCAAATATGTACTGTCGAGAAGGGGAGGGGACTAAATTCTTTCAGACATCCAATACTTTTTTGGAGACGGCATCTCGGGGTCCCTTCCCCTTGCCCTATCTTTCTTTATGGATCTACTCGGTGATTCGCTGCTCTCAGACATTTGACCATTGATATGACTATATATGGGATTTGATAgttttgtctagaagggataTAGCTTTTGTCAAActtgacttttcgtagcaggtttagGATAACTTGCGCAGCAGGTTATGAGAATTCACTTATAAGGTTAGtgtaattaggttaaggttaggtaaagtGTTAATGTTAGCTAAAATGATCAAAAAACTACGTTTGACTtcaaatttgacaaaagctgtatcccacCTAGGCATGACCGATTTGATGGGCAGGAGAGCAGCCCCTTCAAGATGTAGGTTCCTATTTCTAAGGTAGTAAATACTACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207088 lncRNA downstream 51463 73003899 ~ 73004346 (-) True G182508
TU207048 lncRNA downstream 66769 72987164 ~ 72989040 (-) True G182487
TU206997 lncRNA downstream 127525 72925725 ~ 72928284 (-) False G182443
TU207135 lncRNA upstream 40321 73107045 ~ 73113341 (-) True G182552
TU207137 lncRNA upstream 40409 73107133 ~ 73113445 (-) True G182554
TU207136 lncRNA upstream 40751 73107475 ~ 73113880 (-) True G182553
TU207237 lncRNA upstream 166478 73233202 ~ 73265698 (-) True G182648
TU207334 lncRNA upstream 342042 73408766 ~ 73410961 (-) True G182734
XM_036954980.1 mRNA downstream 178136 72871971 ~ 72877673 (-) False c2cd4a
XM_021570993.2 mRNA downstream 182038 72871971 ~ 72873771 (-) False c2cd4a
XR_005034538.1 mRNA downstream 280160 72774064 ~ 72775649 (-) True LOC118937294
XM_036954955.1 mRNA downstream 311297 72456866 ~ 72744512 (-) True roraa
XM_036954961.1 mRNA downstream 522988 72456866 ~ 72532821 (-) False roraa
XM_021571110.2 mRNA upstream 9296 73076020 ~ 73078083 (-) False LOC110495704
XM_021571107.2 mRNA upstream 9296 73076020 ~ 73078090 (-) False LOC110495704
XM_021571097.2 mRNA upstream 9296 73076020 ~ 73078109 (-) False LOC110495704
XM_021571138.2 mRNA upstream 79497 73146221 ~ 73157311 (-) True etfa
XM_021571186.2 mRNA upstream 109997 73176721 ~ 73272412 (-) False scaper
TU206204 other downstream 182064 72872744 ~ 72873745 (-) True c2cd4a
TU205184 other downstream 944146 72110968 ~ 72111663 (-) True G180716
TU204130 other downstream 1580830 71474372 ~ 71474979 (-) True G179754
TU203749 other downstream 1913625 71134534 ~ 71142184 (-) True LOC110495479
TU203649 other downstream 1985605 71034735 ~ 71070204 (-) True G179310
TU207075 other upstream 9303 73076027 ~ 73078379 (-) True LOC110495704
TU207306 other upstream 278226 73344950 ~ 73345847 (-) True G182708
TU207489 other upstream 609488 73676212 ~ 73676423 (-) True G182882
TU207716 other upstream 926354 73993078 ~ 73993545 (-) True G183096
TU208238 other upstream 1040159 74106883 ~ 74110791 (-) True G183538

Expression Profile