RNA id: TU207306


Basic Information

Item Value
RNA id TU207306
length 523
RNA type TUCP
GC content 0.52
exon number 3
gene id G182708
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73344950 ~ 73345847 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgggtcccaggattaagcaccgcactgcacggagccatgcactgagtgtggagcaaatggtttgtgtggccttgcgcttttttgctagtggagccttcctgtactcagtgggggatgcagaacagctgaacaaggccacaatttgccgcacaataaggagtgtgtgtctggctatcaaagcattagcagatgtcttcatctccttccctggccacagaagactctgtgacatcaaagaggagttctataggattgcagatggtctgcaattctgactgtgtgatcagcaatgttgtggcaaaatggcctggctcagtccatgactccagaatctttcgggcctctgaaatctatcagtgcctatcacaaggtgaattctctggtgtgttgctgggagacagggggtatggctgccagccttttctcctgacacctttcacagacccccaggaagcacagcaggcctacaaccatgcccatgccaggaccagggccagagttgaaatgacctttggcctcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207237 lncRNA downstream 79252 73233202 ~ 73265698 (-) True G182648
TU207136 lncRNA downstream 231070 73107475 ~ 73113880 (-) True G182553
TU207137 lncRNA downstream 231505 73107133 ~ 73113445 (-) True G182554
TU207135 lncRNA downstream 231609 73107045 ~ 73113341 (-) True G182552
TU207085 lncRNA downstream 255472 73002096 ~ 73089478 (-) True G182506
TU207334 lncRNA upstream 62919 73408766 ~ 73410961 (-) True G182734
TU207423 lncRNA upstream 216068 73561915 ~ 73562219 (-) True G182820
TU207424 lncRNA upstream 217085 73562932 ~ 73563178 (-) True G182821
TU207427 lncRNA upstream 219435 73565282 ~ 73565492 (-) True G182824
TU207429 lncRNA upstream 221162 73567009 ~ 73567506 (-) True G182826
XM_021571234.2 mRNA downstream 16072 73324175 ~ 73328878 (-) True LOC100653450
XM_021571170.2 mRNA downstream 52131 73176721 ~ 73292819 (-) False scaper
XM_021571178.2 mRNA downstream 52131 73176721 ~ 73292819 (-) False scaper
XM_021571194.2 mRNA downstream 52131 73176721 ~ 73292819 (-) True scaper
XM_021571186.2 mRNA downstream 72538 73176721 ~ 73272412 (-) False scaper
XM_021571272.2 mRNA upstream 19719 73365566 ~ 73373438 (-) False kti12
XM_036955153.1 mRNA upstream 19719 73365566 ~ 73373678 (-) True kti12
XM_021571293.2 mRNA upstream 32328 73378175 ~ 73385596 (-) False znf592
XM_036955163.1 mRNA upstream 32328 73378175 ~ 73385597 (-) False znf592
XM_036955169.1 mRNA upstream 32328 73378175 ~ 73385597 (-) False znf592
TU207075 other downstream 266571 73076027 ~ 73078379 (-) True LOC110495704
TU207073 other downstream 278226 73027384 ~ 73066724 (-) False G182494
TU207071 other downstream 283637 73056242 ~ 73061313 (-) False G182494
TU206204 other downstream 471205 72872744 ~ 72873745 (-) True c2cd4a
TU205184 other downstream 1233287 72110968 ~ 72111663 (-) True G180716
TU207489 other upstream 330365 73676212 ~ 73676423 (-) True G182882
TU207716 other upstream 647231 73993078 ~ 73993545 (-) True G183096
TU208238 other upstream 761036 74106883 ~ 74110791 (-) True G183538
TU208774 other upstream 1385025 74730872 ~ 74732637 (-) True G184006
TU210008 other upstream 2260380 75606227 ~ 75606648 (-) True LOC110496186