RNA id: TU207429


Basic Information

Item Value
RNA id TU207429
length 498
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G182826
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73567009 ~ 73567506 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTGAAGGCAAGAAAGGCTGGATTTCCAGACACATCCTGTCATACACAAAAAAACAGTGTCTCACATTGTTATGGCACAACACAATAGACCTACAATAGATACCTGTatcaaatacacacatacatactgtatgactGTGTAGATGCATGTGTGCTGCCATTTGCTTTAGCAATGCATTGTCCATTCTCTCAAGAGAGACCTCAAAGCTCAAGTAGAGGAAACAGGGTGTTTTAATGCAAATGTCTTAAGCTGAAGCAGCAGTGTGTGAGAATTGACCACCCAACCTTGCATGGATGAGGATCCACACCATATGTCTCCAGCATCTGGGCTTTCTGGAGAAAATTCAGCTCTGATGTGTCAGGTGTCTGGCCACTGAGAGAGAGCATCAATGTCTGATTAAGAAATTGAACATCAATACAGGTCTATGAAAAGAAAGAAGCAAAGGTAAAATGCATAAATAATATTAACTATGACAGAACTTCAGTGCcttcaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207427 lncRNA downstream 1517 73565282 ~ 73565492 (-) True G182824
TU207424 lncRNA downstream 3831 73562932 ~ 73563178 (-) True G182821
TU207423 lncRNA downstream 4790 73561915 ~ 73562219 (-) True G182820
TU207334 lncRNA downstream 156048 73408766 ~ 73410961 (-) True G182734
TU207237 lncRNA downstream 301311 73233202 ~ 73265698 (-) True G182648
TU207432 lncRNA upstream 2696 73570202 ~ 73570423 (-) True G182829
TU207434 lncRNA upstream 4094 73571600 ~ 73572036 (-) True G182831
TU207448 lncRNA upstream 33346 73600852 ~ 73631736 (-) True G182841
TU207483 lncRNA upstream 101449 73668955 ~ 73669190 (-) True G182876
TU207488 lncRNA upstream 107873 73675379 ~ 73675604 (-) True G182881
XM_021571322.2 mRNA downstream 126214 73418615 ~ 73440795 (-) True alpk3a
XM_036955163.1 mRNA downstream 181412 73378175 ~ 73385597 (-) False znf592
XM_036955169.1 mRNA downstream 181412 73378175 ~ 73385597 (-) False znf592
XM_036955180.1 mRNA downstream 181412 73378175 ~ 73385597 (-) True znf592
XM_021571293.2 mRNA downstream 181413 73378175 ~ 73385596 (-) False znf592
XM_036955271.1 mRNA upstream 12390 73579896 ~ 73592472 (-) False blm
XM_021571388.2 mRNA upstream 12390 73579896 ~ 73605871 (-) False blm
XM_021571397.2 mRNA upstream 12390 73579896 ~ 73605871 (-) False blm
XM_021571402.2 mRNA upstream 12390 73579896 ~ 73605873 (-) True blm
XM_021571425.2 mRNA upstream 39383 73606889 ~ 73610117 (-) True ctsh
TU207306 other downstream 221162 73344950 ~ 73345847 (-) True G182708
TU207075 other downstream 488630 73076027 ~ 73078379 (-) True LOC110495704
TU207073 other downstream 500285 73027384 ~ 73066724 (-) False G182494
TU207071 other downstream 505696 73056242 ~ 73061313 (-) False G182494
TU206204 other downstream 693264 72872744 ~ 72873745 (-) True c2cd4a
TU207489 other upstream 108706 73676212 ~ 73676423 (-) True G182882
TU207716 other upstream 425572 73993078 ~ 73993545 (-) True G183096
TU208238 other upstream 539377 74106883 ~ 74110791 (-) True G183538
TU208774 other upstream 1163366 74730872 ~ 74732637 (-) True G184006
TU210008 other upstream 2038721 75606227 ~ 75606648 (-) True LOC110496186

Expression Profile