RNA id: TU206699



Basic Information


Item Value
RNA id TU206699
length 438
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G182154
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73635627 ~ 73636093 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctgaagagagagagagctgtttgaGCTGAGAGACggaatgtacagtactgtatgccTACCTGGAACATGGGGTAGGTGAGGAAGGTCTCCAGAGTCCTCTCCTCACAGTCTGGCTTGGCCTCATACTGCTTCAGCAGCTTGTCAAAGTCTCGGTTCTGTTTACAGTGTGCCAGGATCTGCAGACTGTATTGGTGGTTCCTCACAAACTCCTGGTAGATGTTCAACATTGGCAGCAGGATGTCAAACAGGTCAGCTGTGAATAGAGAGGACCAACAAGTGAATGAGAGATTGATAGATGATGTATGAGGTCAATTGGGACATGGCATTATCAAATTCATCCATCCATTAAATGACCCTGAAAAAAAGCACTTTAGTCAGCTTACCCAAAACTAATGTTGGCCAGCTTGCTATTCTTGCTTTCAACCCTTGGTAGAATAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU206576 lncRNA upstream 47962 73587104 ~ 73587665 (+) True G182037
TU206665 lncRNA upstream 61706 73573605 ~ 73573921 (+) True G182124
TU206558 lncRNA upstream 220906 73413662 ~ 73414721 (+) True G182020
TU206492 lncRNA upstream 268644 73365579 ~ 73366983 (+) True G181965
TU206529 lncRNA upstream 295555 73339463 ~ 73340072 (+) True G181994
TU206700 lncRNA downstream 457 73636550 ~ 73636988 (+) True G182155
TU206757 lncRNA downstream 70239 73706332 ~ 73766435 (+) True G182209
TU206778 lncRNA downstream 97320 73733413 ~ 73734816 (+) True LOC110495913
TU206891 lncRNA downstream 247467 73883560 ~ 73937132 (+) False LOC110495946
TU206895 lncRNA downstream 326899 73962992 ~ 73963709 (+) True LOC110495946
XM_036955241.1 mRNA upstream 57447 73456669 ~ 73578180 (+) False LOC110501876
XM_036955248.1 mRNA upstream 57448 73456675 ~ 73578179 (+) False LOC110501876
trnah-gug-2 mRNA upstream 180124 73455432 ~ 73455503 (+) True trnah-gug-2
XM_021571375.2 mRNA upstream 180765 73436134 ~ 73454862 (+) False malt3
XM_021571366.2 mRNA upstream 180765 73441465 ~ 73454862 (+) True malt3
XM_021571436.2 mRNA downstream 97302 73733395 ~ 73737729 (+) False LOC110495913
XM_021571480.2 mRNA downstream 120879 73756972 ~ 73768531 (+) True idh2
XM_021571519.2 mRNA downstream 247458 73883551 ~ 73984737 (+) False LOC110495946
XM_021571502.2 mRNA downstream 247463 73883556 ~ 73984737 (+) False LOC110495946
XM_021571494.2 mRNA downstream 255154 73891247 ~ 73984737 (+) False LOC110495946
TU206688 other upstream 11109 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 25390 73606892 ~ 73610237 (+) True G182139
TU206574 other upstream 55552 73576765 ~ 73580075 (+) True LOC110501876
TU206530 other upstream 293350 73341380 ~ 73342277 (+) False G181995
TU206531 other upstream 293350 73341707 ~ 73342277 (+) True G181995
TU208054 other downstream 893556 74529649 ~ 74535026 (+) True G183361
TU208178 other downstream 1075488 74711581 ~ 74714114 (+) False LOC110496107
TU208835 other downstream 1250005 74886098 ~ 74886500 (+) True LOC110496116
TU209105 other downstream 1401159 75037252 ~ 75041090 (+) False LOC110496136
TU209106 other downstream 1450529 75086622 ~ 75087407 (+) False LOC110496136

Expression Profile