Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028463 |
| length | 936 |
| RNA type | mRNA |
| GC content | 0.57 |
| exon number | 3 |
| gene id | XLOC_014338 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 47311020 ~ 47336408 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0015012 | heparan sulfate proteoglycan biosynthetic process | biological_process |
| GO:0006486 | protein glycosylation | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0030176 | integral component of endoplasmic reticulum membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0016757 | transferase activity, transferring glycosyl groups | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0015020 | glucuronosyltransferase activity | molecular_function |
| GO:0050508 | glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity | molecular_function |
| GO:0050509 | N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity | molecular_function |
| GO:0008375 | acetylglucosaminyltransferase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050211-5 | Predicted to enable N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity and glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process. Predicted to act upstream of or within protein glycosylation. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be active in Golgi apparatus. Is expressed in brain; fin; otic vesicle; retina; and somite. Orthologous to human EXTL1 (exostosin like glycosyltransferase 1). |
| ensembl_id | ENSDART00000138295 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00030050 | lncRNA | upstream | 119519 | 47188530 ~ 47191501 (+) | True | XLOC_014334 |
| TCONS_00030049 | lncRNA | upstream | 872885 | 46423091 ~ 46438135 (+) | True | XLOC_014331 |
| TCONS_00030048 | lncRNA | upstream | 1030089 | 46240507 ~ 46280931 (+) | False | XLOC_014327 |
| TCONS_00029735 | lncRNA | upstream | 1091980 | 46216335 ~ 46219040 (+) | False | XLOC_014325 |
| TCONS_00030051 | lncRNA | downstream | 1580 | 47337582 ~ 47338157 (+) | True | XLOC_014339 |
| TCONS_00028467 | lncRNA | downstream | 85058 | 47421060 ~ 47423627 (+) | True | XLOC_014340 |
| TCONS_00030052 | lncRNA | downstream | 102202 | 47438204 ~ 47448594 (+) | True | XLOC_014341 |
| TCONS_00029737 | lncRNA | downstream | 254027 | 47590029 ~ 47591236 (+) | True | XLOC_014345 |
| TCONS_00029738 | lncRNA | downstream | 447090 | 47783092 ~ 47784972 (+) | False | XLOC_014346 |
| TCONS_00028460 | mRNA | upstream | 1794 | 47299212 ~ 47309226 (+) | False | XLOC_014336 |
| TCONS_00028461 | mRNA | upstream | 1794 | 47301893 ~ 47309226 (+) | True | XLOC_014336 |
| TCONS_00028458 | mRNA | upstream | 12363 | 47290287 ~ 47298657 (+) | True | XLOC_014335 |
| TCONS_00028457 | mRNA | upstream | 173595 | 47135677 ~ 47137425 (+) | True | XLOC_014333 |
| TCONS_00028456 | mRNA | upstream | 485337 | 46824723 ~ 46825683 (+) | True | XLOC_014332 |
| TCONS_00028465 | mRNA | downstream | 58268 | 47394270 ~ 47423628 (+) | False | XLOC_014340 |
| TCONS_00028466 | mRNA | downstream | 69865 | 47405867 ~ 47423628 (+) | False | XLOC_014340 |
| TCONS_00028468 | mRNA | downstream | 140906 | 47476908 ~ 47481618 (+) | True | XLOC_014342 |
| TCONS_00028469 | mRNA | downstream | 166579 | 47502581 ~ 47523302 (+) | True | XLOC_014343 |
| TCONS_00028471 | mRNA | downstream | 447135 | 47783137 ~ 47787275 (+) | True | XLOC_014346 |
| TCONS_00028459 | other | upstream | 1637 | 47299166 ~ 47309383 (+) | False | XLOC_014336 |
| TCONS_00028462 | other | upstream | 4282 | 47306623 ~ 47306738 (+) | True | XLOC_014337 |
| TCONS_00028450 | other | upstream | 1030089 | 46243620 ~ 46280931 (+) | False | XLOC_014327 |
| TCONS_00028436 | other | upstream | 1802039 | 45508865 ~ 45508981 (+) | True | XLOC_014316 |
| TCONS_00028433 | other | upstream | 3278856 | 44009473 ~ 44032164 (+) | False | XLOC_014312 |
| TCONS_00028470 | other | downstream | 238613 | 47574615 ~ 47574823 (+) | True | XLOC_014344 |
| TCONS_00028474 | other | downstream | 682004 | 48018006 ~ 48018346 (+) | True | XLOC_014351 |
| TCONS_00028479 | other | downstream | 682804 | 48018806 ~ 48023408 (+) | False | XLOC_014352 |
| TCONS_00028484 | other | downstream | 697297 | 48033299 ~ 48033440 (+) | True | XLOC_014354 |
