RNA id: TU206757



Basic Information


Item Value
RNA id TU206757
length 1264
lncRNA type read_through
GC content 0.43
exon number 2
gene id G182209
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73706332 ~ 73766435 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gaacaacatttattggatatttcaaacttttttaacaaatcaaaaactaaaaaattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggatttaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcatcgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccggatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgcatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttcaatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccagctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatccggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU206700 lncRNA upstream 69344 73636550 ~ 73636988 (+) True G182155
TU206699 lncRNA upstream 70239 73635627 ~ 73636093 (+) True G182154
TU206576 lncRNA upstream 118667 73587104 ~ 73587665 (+) True G182037
TU206665 lncRNA upstream 132411 73573605 ~ 73573921 (+) True G182124
TU206558 lncRNA upstream 291611 73413662 ~ 73414721 (+) True G182020
TU206891 lncRNA downstream 117125 73883560 ~ 73937132 (+) False LOC110495946
TU206895 lncRNA downstream 196557 73962992 ~ 73963709 (+) True LOC110495946
TU207704 lncRNA downstream 224102 73990537 ~ 73991061 (+) True G183089
TU207706 lncRNA downstream 224930 73991365 ~ 73991640 (+) True G183091
TU207719 lncRNA downstream 228720 73995155 ~ 73995604 (+) True G183099
XM_036955241.1 mRNA upstream 128152 73456669 ~ 73578180 (+) False LOC110501876
XM_036955248.1 mRNA upstream 128153 73456675 ~ 73578179 (+) False LOC110501876
trnah-gug-2 mRNA upstream 250829 73455432 ~ 73455503 (+) True trnah-gug-2
XM_021571375.2 mRNA upstream 251470 73436134 ~ 73454862 (+) False malt3
XM_021571366.2 mRNA upstream 251470 73441465 ~ 73454862 (+) True malt3
XM_021571519.2 mRNA downstream 117116 73883551 ~ 73984737 (+) False LOC110495946
XM_021571502.2 mRNA downstream 117121 73883556 ~ 73984737 (+) False LOC110495946
XM_021571494.2 mRNA downstream 124812 73891247 ~ 73984737 (+) False LOC110495946
XM_021571509.2 mRNA downstream 124812 73891247 ~ 73984737 (+) False LOC110495946
XM_021571532.2 mRNA downstream 232834 73999269 ~ 74010559 (+) True LOC110495967
TU206688 other upstream 81814 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 96095 73606892 ~ 73610237 (+) True G182139
TU206574 other upstream 126257 73576765 ~ 73580075 (+) True LOC110501876
TU206530 other upstream 364055 73341380 ~ 73342277 (+) False G181995
TU208054 other downstream 763214 74529649 ~ 74535026 (+) True G183361
TU208178 other downstream 945146 74711581 ~ 74714114 (+) False LOC110496107
TU208835 other downstream 1119663 74886098 ~ 74886500 (+) True LOC110496116
TU209105 other downstream 1270817 75037252 ~ 75041090 (+) False LOC110496136
TU209106 other downstream 1320187 75086622 ~ 75087407 (+) False LOC110496136

Expression Profile