RNA id: TU207731



Basic Information


Item Value
RNA id TU207731
length 207
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G183108
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74015591 ~ 74015797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCACCACACCGACCACCTTTAATActtctccctcattctcttccatttctccttctgtcttcagctcactctgcttatactttctaccattcttcttctCAAACTATCTCCCTTTTCCAGCCATTTTTAACCAACTTATGCTCACCCTCTTCTTCAATATTTCTTaaacctcctctgcctctctttttccttccattcctcctccat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU207721 lncRNA upstream 18365 73996704 ~ 73997226 (+) True G183101
TU207720 lncRNA upstream 19648 73995682 ~ 73995943 (+) True G183100
TU207719 lncRNA upstream 19987 73995155 ~ 73995604 (+) True G183099
TU207706 lncRNA upstream 23951 73991365 ~ 73991640 (+) True G183091
TU207704 lncRNA upstream 24530 73990537 ~ 73991061 (+) True G183089
TU207740 lncRNA downstream 217 74016014 ~ 74016360 (+) True G183117
TU207744 lncRNA downstream 2376 74018173 ~ 74034081 (+) True G183119
TU207780 lncRNA downstream 45099 74060896 ~ 74129871 (+) False G183152
TU207781 lncRNA downstream 100289 74116086 ~ 74129871 (+) True G183152
TU207798 lncRNA downstream 125550 74141347 ~ 74141645 (+) True G183168
XM_021571532.2 mRNA upstream 5032 73999269 ~ 74010559 (+) True LOC110495967
XM_021571519.2 mRNA upstream 30854 73883551 ~ 73984737 (+) False LOC110495946
XM_021571502.2 mRNA upstream 30854 73883556 ~ 73984737 (+) False LOC110495946
XM_021571494.2 mRNA upstream 30854 73891247 ~ 73984737 (+) False LOC110495946
XM_021571509.2 mRNA upstream 30854 73891247 ~ 73984737 (+) False LOC110495946
XM_021571589.2 mRNA downstream 54167 74069964 ~ 74104249 (+) False LOC110495989
XM_021571578.2 mRNA downstream 54169 74069966 ~ 74110824 (+) True LOC110495989
XM_021571609.2 mRNA downstream 110426 74126223 ~ 74139502 (+) True LOC110495996
XM_021571685.2 mRNA downstream 162686 74178483 ~ 74198686 (+) False LOC110496029
XM_021571668.2 mRNA downstream 162781 74178578 ~ 74198686 (+) False LOC110496029
TU206688 other upstream 391073 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 405354 73606892 ~ 73610237 (+) True G182139
TU206574 other upstream 435516 73576765 ~ 73580075 (+) True LOC110501876
TU206530 other upstream 673314 73341380 ~ 73342277 (+) False G181995
TU208054 other downstream 513852 74529649 ~ 74535026 (+) True G183361
TU208178 other downstream 695784 74711581 ~ 74714114 (+) False LOC110496107
TU208835 other downstream 870301 74886098 ~ 74886500 (+) True LOC110496116
TU209105 other downstream 1021455 75037252 ~ 75041090 (+) False LOC110496136
TU209106 other downstream 1070825 75086622 ~ 75087407 (+) False LOC110496136

Expression Profile